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Detailed information on CNT3022417


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Populus trichocarpaJuglans regia58.379.9288.67150forward
CNT30701229Populus trichocarpaQuercus lobata59.537.8790.85153forward
CNT30500934Populus trichocarpaCoffea canephora53.78.687.68138forward
CNT30378910Populus trichocarpaManihot esculenta60.713.4693.59156forward
CNT30631092Populus trichocarpaVigna unguiculata59.5313.5384.97153forward
CNT30488808Populus trichocarpaOlea europaea57.228.1690.48147forward
CNT30711471Populus trichocarpaGlycine max59.5311.384.97153forward
CNT30560173Populus trichocarpaActinidia chinensis59.1416.8588.16152forward
CNT3085816Populus trichocarpaVigna radiata54.4721.9486.43140forward
CNT30172058Populus trichocarpaTrifolium pratense56.039.4986.11144forward
CNT30612591Populus trichocarpaArabis alpina58.7518.9282.78151forward
CNT30605341Populus trichocarpaGossypium raimondii59.5314.0289.54153forward
CNT30424510Populus trichocarpaPapaver somniferum41.2523.7187.74106forward
CNT30572302Populus trichocarpaVitis vinifera76.2628.3688.27196forward
CNT3028352Populus trichocarpaTheobroma cacao59.5316.5488.24153forward
CNT30119335Populus trichocarpaCitrus clementina75.4929.4889.69194forward
CNT3035896Populus trichocarpaCucumis melo56.031688.19144forward

Expression of CNT3022417

Peptides detected in this lncRNA

>peptide 1 (36 aa)
SAVDHLKLTVLGKCLRICRQTSSVPSIITREFTGQV*

>peptide 2 (84 aa)
CCGSPQAHGSWQMSQDLQTNQQCPIHNHQGIHRSGMMGFAQRMDPRTLGGLASKCRLLDCRGCHDSSLLMLPLSCLLCFSLTLSR

Sequence

>CNT3022417
TCTGCTGTGGATCACCTCAAGCTCACGGTTCTTGGCAAATGTCTCAGGATCTGCAGACAAACCAGCAGTGTCCCATCCATAATCACCAGGGAATTCACCG
GTCAGGTATGATGGGGTTTGCTCAGAGAATGGACCCAAGAACTTTGGGCGGTCTGGCCAGCAAATGCAGACTGTTGGATTGCAGAGGCTGCCATGACTCT
TCTTTGTTAATGCTGCCTCTAAGTTGCTTGCTCTGCTTTTCTCTTACTCTATCAAGG