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Detailed information on CNT30512563


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317234Juglans regiaCorylus avellana21.9654.1685.24332forward
CNT30701229Juglans regiaQuercus lobata29.723.188.2449forward
CNT30378916Juglans regiaManihot esculenta29.73585.75449forward
CNT30526271Juglans regiaPhaseolus vulgaris12.0427.3385.71182forward
CNT30631092Juglans regiaVigna unguiculata29.6339.6184.38448forward
CNT30488808Juglans regiaOlea europaea17.249.8185.38260forward
CNT30711471Juglans regiaGlycine max19.0521.2784.38288forward
CNT30561789Juglans regiaActinidia chinensis22.6930.7986.3343forward
CNT3085816Juglans regiaVigna radiata24.457.8483.74369forward
CNT30172058Juglans regiaTrifolium pratense29.0328.9484.97439forward
CNT30605341Juglans regiaGossypium raimondii29.7641.2585.56450forward
CNT30648173Juglans regiaRosa chinensis29.7625.9185.78450forward
CNT30360562Juglans regiaLactuca sativa24.2740.2981.74367forward
CNT30409824Juglans regiaPapaver somniferum26.9860.7180.88408forward
CNT30572302Juglans regiaVitis vinifera11.1824.4689.35169forward
CNT3028352Juglans regiaTheobroma cacao19.0531.1485.76288forward
CNT3022417Juglans regiaPopulus trichocarpa9.9258.3788.67150forward
CNT30326027Juglans regiaAsparagus officinalis22.5559.9383.87341forward
CNT30119392Juglans regiaCitrus clementina26.9844.486.03408forward
CNT3035896Juglans regiaCucumis melo18.6531.3384.75282forward
CNT30330082Juglans regiaDioscorea rotundata19.1854.183.45290forward
CNT30112551Juglans regiaFicus carica27.7167.6984.73419forward
CNT3040152Juglans regiaMarchantia polymorpha20.1730.9681.97305forward

Expression of CNT30512563

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSNSRFLANVSGSADKPAVSQP*

>peptide 2 (34 aa)
MNQVWVAKVIEATLREDLGTGLEPYCLAKLNTIL*

>peptide 3 (32 aa)
MIIIQTEFTSQTHHGHRHLNASIAFEIILIKR*

>peptide 4 (36 aa)
MLKKKEQKYKINGSFFRMIFFFFSGHESRQSLFITK*

>peptide 5 (36 aa)
MASARSLAFFKAKKAVETRLFQPPGAKFKRVIFVKA*

>peptide 6 (76 aa)
MLQLQRHHDVSVWICSFSGDKVSGISPCIVGHRISNMVVEVLNRALSVGQRHRRGRLGRVLRRVVLHQFCSPQQNP*

Sequence

>CNT30512563
ATGAAGCCCAAAGATCAGCGTCTTAACTTCAAGTACTGATACAATAGTAATTTGCAGACACAGTTTCTACCGGTGGCAGTAGTAGTATTAAATTATTAAT
ACATCAGCACAGAGGAACAACAAGACAACATCAGCAAAGGCAATTAAGAAGATTCGAGTAATGTTACAACTGCAGAGACATCATGATGTATCTGTTTGGA
TTTGCTCATTTTCCGGGGACAAAGTTAGTGGCATAAGCCCATGCATTGTTGGCCACCGGATCAGCAACATGGTCGTAGAGGTTCTCAATCGGGCCCTTTC
CGTGGGTCAAAGGCACCGCCGGGGTAGATTGGGTCGAGTCCTTCGCCGAGTGGTCCTCCACCAATTCTGTAGCCCTCAACAAAACCCATGAGCACAACCT
GAACAGCCCAGATAGCCAGGATGCTCTGAGCATGAACCAGGTTTGGGTTGCCAAGGTAATCGAGGCCACCCTCAGAGAAGATTTGGGCACCGGCCTTGAA
CCATACTGCCTCGCCAAACTTAACACCATTCTTTGAAAGGACTTCAGGGAAGACACAACCCAGAGCTCCAAGCATGGCCCATCGGGAGTGGATCACCTCC
AACTCACGGTTCTTGGCGAACGTCTCGGGGTCTGCCGATAAGCCAGCAGTGTCCCAGCCGTAGTCACCGGGGAATTCACCGGTCAGGTATGATGGAGTTT
GCTCTGAGAATGGACCCAAGTACTTAGGGCGGTCTGGGCCATACCTGTTTTACATATCAACCACAGATAAATTATGATACGGGTTTTTCTTTTATACGAT
CGACCAAATTTTATATATTGTTCGGAATGATCATGTGAAGACAGTTTGCTCTGACATAGTGTATGTTTCTGTGGTTTGAACTAAAATACATGGCATGCTG
AAAAAAAAGGAACAAAAATACAAGATTAATGGAAGTTTCTTCAGAATGATTTTTTTTTTTTTTAGTGGCCACGAGTCAAGACAATCTTTATTCATTACTA
AATAAGAAAAGTCGGCAACACTAACGAAATGATCATCATCCAGACTGAATTTACTAGTCAAACCCATCATGGTCATAGACATCTAAATGCCTCGATAGCT
TTTGAAATAATACTAATAAAGAGATGAACGATTTGGAAAAAATTACTGGTTGGTAAGTGAATTTTAGGTTTACATTCAAGAAGTCATGCGAAGGTGAGCC
ATGGCTAGCGCTAGATCTCTTGCATTTTTCAAAGCGAAGAAAGCAGTAGAAACCCGCTTGTTCCAGCCTCCAGGAGCTAAATTTAAGCGTGTTATTTTTG
TTAAAGCCTAAAAGTAACCAAACTAAAACTTAGACCTAAAAAACTTGCATGCATAAGAAAGAAATTAGTTTGCCTTCTAATCTCGGCCATGCCATTTAAA
GGGAAATATGTATTATGTATATTGGTAATCAAACCTTGCATACAGTTCTAAATATGGATGCTTATCCTAAATGAAAATGACTTCAACTAGCAACCAATTA
ATTAGGAGTTAC