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Detailed information on CNT30378910


BLAST search results

BLAST vs Swiss-Prot:
sp|P14279|CB25_SOLLC, E-value = 3e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316941Manihot esculentaCorylus avellana20.3639.9383.9236forward
CNT30500934Manihot esculentaCoffea canephora28.6520.781.93332forward
CNT30616538Manihot esculentaSesamum indicum20.7949.0885.89241forward
CNT30488808Manihot esculentaOlea europaea22.1749.2386.77257forward
CNT30204126Manihot esculentaHelianthus annuus23.4753.1283.09272forward
CNT30716010Manihot esculentaMalus domestica golden19.4138.7983.56225forward
CNT30625449Manihot esculentaDaucus carota46.2558.2680.6536forward
CNT30572302Manihot esculentaVitis vinifera14.5824.4688.76169forward
CNT3028352Manihot esculentaTheobroma cacao23.6429.6287.59274forward
CNT3022417Manihot esculentaPopulus trichocarpa13.4660.793.59156forward
CNT3035896Manihot esculentaCucumis melo22.2628.6784.11258forward
CNT30723501Manihot esculentaLupinus angustifolius29.5131.6785.09342forward

Expression of CNT30378910

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLNLILPSFSRNKVSSICPCIVGHWISQVIKE*

>peptide 2 (74 aa)
MLNLILSSFSRNKVSGISPCIVGHWISQVIKEVLNWSLSSYNSLNKEPKHGKHCQASVLNLFHLQFCKCIRIIS*

>peptide 3 (35 aa)
MENIAKRPFLISFTFNSANASGSSANPRGSKAPPG*

>peptide 4 (54 aa)
MHQDHQLTPEGQRHHQGKWGQVLHRVVLHQLYSLQQIPLAQPELPRLQGCSERG*

Sequence

>CNT30378910
GGCATGAGAATTCTGATCTCATGTTCTGTTGATACAATGTTTTCACTACTAAAACACAAGTAGAGTAATGACGACGTCCACTACAAGAACATTTCCAGAA
ATTTAAAATACTGGTACTGAGATGTTGAACTTGATTCTCCCTTCATTTTCCAGGAACAAAGTTAGTAGCATATGCCCATGCATTGTTGGCCACTGGATCA
GCCAAGTGATCAAAGAGTAATAATGGCCTCCACAACAAGAACATTTCCAGAAATTTAAAGCACCAGGACTGAGTAATGTTGAACCTGATTCTCTCTTCAT
TTTCCAGGAACAAAGTTAGTGGCATAAGCCCATGCATTGTTGGCCACTGGATCAGCCAAGTGATCAAAGAGGTTCTCAATTGGTCCCTTTCCAGTTACAA
TAGCCTGAACAAAGAACCCAAACATGGAAAACATTGCCAAGCGTCCGTTCTTAATCTCTTTCACCTTCAATTCTGCAAATGCATCAGGATCATCAGCTAA
CCCCAGAGGGTCAAAGGCACCACCAGGGTAAATGGGGTCAAGTCCTTCACCGAGTGGTCCTCCACCAACTCTATAGCCTTCAACAAATCCCATTAGCACA
ACCTGAACTGCCCAGATTGCAAGGATGCTCTGAGCGTGGATAAGATTTGGGCTCCAGCTTTGAACCAGACTGCCTCGCCAAATTTGACACCATTCTTGGA
TAGGATTTCGGGGAAGACGCAGCCAAGTGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGCTCACGGTTCTTGGCAAATGTCTCTGGATCTGCA
GACAAACCAGCAGTGTCCCATCCATAATCACCGGGGAATTCACCAGTAAGGTATGAGGGAGTTTGCTCAGAGAATGGACCCAAATATTTTGGGCGGTCTG
GACCATACCTGTTTTATGAATTACAGTTAGATATATCCCCAACGCAAAATAGTAGCCGTTTATTCTCAAAGCAACTTGCATACACGTAACCAAAGCTCTC
TCAAGTTTTCTTTGCTTATTTTCTTGGACATCTCCTTAAAAGATAAGATGCCTTTGAGCTCTACAAATTCGTTTTCTCTTCTTCTTCTTCTAATTATTTG
GCTTAATCCCCATTTTTTAAGAAATTAAGATAATAACAATTTGTAATTGAGAATAATAA