CANTATAdb - search

Detailed information on CNT30711471

BLAST search results

BLAST vs Swiss-Prot:
sp|P27520|CB215_PEA, E-value = 3e-89

BLAST vs NONCODE:
NONATHT001041, E-value = 2e-32

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691986	Glycine max	Oryza sativa	11.52	52	86.54	156	forward
CNT30512563	Glycine max	Juglans regia	21.27	19.05	84.38	288	forward
CNT30488808	Glycine max	Olea europaea	19.5	50.57	82.2	264	forward
CNT30560173	Glycine max	Actinidia chinensis	34.64	52	80.38	469	forward
CNT30234046	Glycine max	Brassica oleracea	19.65	45.94	81.58	266	forward
CNT3074635	Glycine max	Brassica juncea	20.01	42.88	81.92	271	forward
CNT30612591	Glycine max	Arabis alpina	19.87	33.71	82.16	269	forward
CNT30572302	Glycine max	Vitis vinifera	12.26	24.02	88.55	166	forward
CNT3028352	Glycine max	Theobroma cacao	21.27	31.14	85.07	288	forward
CNT3022417	Glycine max	Populus trichocarpa	11.3	59.53	84.97	153	forward
CNT3035896	Glycine max	Cucumis melo	35.75	53.78	80.17	484	forward

Expression of CNT30711471

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MELNTRELQKGAEDCIACRHPHCPGTKLVA*

>peptide 2 (63 aa)
MENIAKRPFLSSLTFNSANASGPPSEKICAPALNHTASPNLTPFFSRISGKVQPRAPSIAHLL*

>peptide 3 (39 aa)
MMESAPRMDPSTWDGQGHTCFVFHNTSDKFLKPSFISVT*

>peptide 4 (51 aa)
RVDIFWGPKFLIYKNIMVLIQIFLLHRCSYISENGVKHKGTAKGSRRLHCM*

Sequence

>CNT30711471
AGAGTTGATATTTTCTGGGGACCCAAATTTCTAATATATAAAAATATAATGGTTCTCATACAGATTTTTCTGCTACACAGGTGTAGTTACATTAGTGAAA
ATGGAGTTAAACACAAGGGAACTGCAAAAGGGAGCAGAAGATTGCATTGCATGTAGGCATCCTCATTGTCCAGGGACAAAGTTAGTGGCATAAGCCCAAG
CATTGTTGGCAACAGGATCAGCAACGTGGTCGTAAAGGTTCTGAATAGGGCCCTTGCCAGTGACAATAGCCTGAACAAAGAAACCAAACATGGAGAACAT
AGCCAAGCGACCGTTCTTGAGTTCCTTGACCTTCAACTCAGCGAATGCATCAGGGCCTCCCTCTGAGAAGATCTGTGCACCGGCCTTGAACCACACGGCC
TCGCCGAATTTGACACCATTCTTCTCAAGGATCTCTGGGAAGGTGCAGCCAAGGGCACCAAGCATTGCCCATCTGCTGTGAATCACCTCCAGCTCCCGGT
TCCTGGCGAAGGTTTCCGGGTCAGCTGATAATCCAGCAGTGTCCCATCCGTAGTCACCAGGGAATTCTCCGGTCAGGTATGATGGAATCTGCTCCGAGAA
TGGACCCAAGTACTTGGGACGGTCAGGGCCATACCTGTTTTGTTTTTCACAACACCTCAGACAAATTCTTAAAACCTAGCTTCATATCTGTTACTTAGTT
GATTTTTTTTATCTTTACAAGACAAGACAATAACTATTATTAATCTGTTATGCTTGCATAATCACTGGCTTTCTAGTTAGCCCCATCCTGCTGAGAATTG
TTAAGTGCAAAACATAGATATAGTTCTATAGATGCTTTTTGGAGTTTTACCTCAGTGATAATCATTAACATTTAACGCGAACTTTTAGTTACGTGAATTA
GTTAGTTAAAACTCCAATTTTAATTATTCCCTCCATCCCAAAATAATAATCGTCTAAAGATTATTTTAGATATACCAAGATAAAATAATAAATAAATGAA
AAACTAAAATGATAATTATTATGAAACAAAGTCTTTTTTTTTTTTTCTCTTCCGGGACAATTATAATGAGATGGAAGAAGTAGAACACAATACCAAAAAC
AAAAGGTTTTGCATCTAAGTTTTGTGGAATTACTAGTATTATTTTATGTTGTCAAGCGAGTATTATATTAAAAGCAGTAACTACTAAGTTGAACTAGTGG
AGTGGGAAGGGTAATGTTGAGTTACCAAATGCTCTGAGGAGCACTCTTGACGGTGCGGCGCATAGCAGTTTGACCAGTGAATGCTGATTGCTGAATAGCA
GAGGTGGCCATGATGGTTGTGTTGGCTAAGGGTTTTTTTTTTTCTTTGTTTTTG