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Detailed information on CNT30119335


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 5e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500934Citrus clementinaCoffea canephora28.7211.7886.77189forward
CNT30488808Citrus clementinaOlea europaea39.5149.8185260forward
CNT30560173Citrus clementinaActinidia chinensis42.5531.0486.79280forward
CNT30313266Citrus clementinaCamelina sativa38.642.1983.07254forward
CNT30625449Citrus clementinaDaucus carota29.4821.0986.08194forward
CNT30572302Citrus clementinaVitis vinifera31.4629.9687.92207forward
CNT3028352Citrus clementinaTheobroma cacao41.1929.387.82271forward
CNT3022417Citrus clementinaPopulus trichocarpa29.4875.4989.69194forward
CNT3035896Citrus clementinaCucumis melo41.7930.5685.45275forward

Expression of CNT30119335

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MNEVGVAKIVKATFREDLSASLEPNCFAELHSILGEDFREDAAKSSKHCPSAVDHL*

>peptide 2 (37 aa)
MTEFSTKAHTIDRIMLQMKQTPSSHEFLHFPGTKLVA*

>peptide 3 (43 aa)
MSRGLLINQRYPSHSHQGTHQSSMMVFAQRMVPSTLGGLASKC*

Sequence

>CNT30119335
TGATGGAAATAAAAGATCAGGAGCATAGCATTTCTAATGGTAACATTACAGAGCTACTAGTAAGTCCATGACAGAGTTTTCCACAAAAGCACATACGATA
GATAGAATAATGTTACAGATGAAACAGACACCATCAAGTCATGAGTTTCTTCACTTTCCGGGAACAAAGTTAGTGGCATAAGCCCAGATAGCCAAAATGC
TCTGAGCATGAATGAGGTTGGGGTTGCCAAGATAGTCAAGGCCACCTTCAGAGAAGATTTGAGCGCCAGCCTTGAACCAAACTGCTTCGCCGAACTTCAC
TCCATTCTTGGAGAGGATTTCAGGGAAGACGCAGCCAAGAGCTCCAAGCATTGCCCATCTGCTGTGGATCACCTCTAGCTCACGGTTCTTAGCAAATGTC
TCGGGGTCTGCTGATAAACCAGCGGTATCCCAGCCATAGTCACCAGGGAACTCACCAGTCAAGTATGATGGTGTTTGCTCAGAGAATGGTCCCAAGTACT
TTGGGCGGTCTGGCCAGCAAATGCTGATTGTTGGATAGCAGAGGTTGCCATATGTTCTTATGCGAAAGCTTTTCCTTTTGTTGCTGAAGCTTCTTTTCGC
ACTCTGAATATGTTTAGGAGCTTAGTGTGAGATGGGTTATATCGGAAATGGGGAGATG