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Detailed information on CNT30605341


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 1e-135

BLAST vs NONCODE:
NONSTUT002515, E-value = 1e-95

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Gossypium raimondiiJuglans regia41.2529.7685.56450forward
CNT30701193Gossypium raimondiiQuercus lobata45.6539.5686.75498forward
CNT30268034Gossypium raimondiiChenopodium quinoa9.5341.9495.19104forward
CNT30378978Gossypium raimondiiManihot esculenta46.8444.5586.3511forward
CNT30631012Gossypium raimondiiVigna unguiculata46.8440.2484.74511forward
CNT30488808Gossypium raimondiiOlea europaea24.1150.3884.41263forward
CNT30560173Gossypium raimondiiActinidia chinensis26.4932.0488.24289forward
CNT3085816Gossypium raimondiiVigna radiata34.3758.7884375forward
CNT30172058Gossypium raimondiiTrifolium pratense40.5129.1486.65442forward
CNT30648173Gossypium raimondiiRosa chinensis41.6126.1484.8454forward
CNT30480205Gossypium raimondiiArabidopsis halleri34.2849.5479.41374forward
CNT30360562Gossypium raimondiiLactuca sativa45.8354.8880.6500forward
CNT30409824Gossypium raimondiiPapaver somniferum35.6657.8984.06389forward
CNT30572302Gossypium raimondiiVitis vinifera15.2224.0290.36166forward
CNT3028352Gossypium raimondiiTheobroma cacao26.4931.2493.77289forward
CNT3022417Gossypium raimondiiPopulus trichocarpa14.0259.5389.54153forward
CNT30326027Gossypium raimondiiAsparagus officinalis31.2659.9382.4341forward
CNT30119392Gossypium raimondiiCitrus clementina37.7644.8388.11412forward
CNT3035896Gossypium raimondiiCucumis melo26.6732.3384.54291forward
CNT30330082Gossypium raimondiiDioscorea rotundata27.1355.2283.45296forward
CNT30112551Gossypium raimondiiFicus carica42.9975.7782.3469forward
CNT30114814Gossypium raimondiiEutrema salsugineum40.8854.1378.48446forward

Expression of CNT30605341

Peptides detected in this lncRNA

>peptide 1 (44 aa)
CFMISSHFKKGAISGKKDMDLMIQQLKRLAVNYISTQQQMLHSS*

>peptide 2 (44 aa)
MSLGQLITQQCPTHSHQGIHLSGMMGFGLRMDPSTLGGQGHTCF*

>peptide 3 (42 aa)
LLYDLISFQERCYFREKGYGFNDTTAQKTSSELHQYTATDAT*

>peptide 4 (34 aa)
MDKVWVAKIVKATLGEYLRSSFEPNCLSELNSIL*

Sequence

>CNT30605341
TTTGCTTTATGATCTCATCTCATTTCAAGAAAGGTGCTATTTCAGGGAAAAAGGATATGGATTTAATGATACAACAGCTCAAAAGACTAGCAGTGAATTA
CATCAGTACACAGCAACAGATGCTACATAGCAGTTAATGTTACAGCTTTCAGAGACATATCTATAATCTAAGTTCATTTTCCGGGGACAAAGTTAGTGGC
ATAAGCCCATGCGTTGTTGGCCACCGGATCGGCAAGGCGGCCATTCTTGATCTCCTTAACCTTCAATTCTGCGAACGCATCAGGATCATCAGCCAGTCCA
AGTGGGTCGAAAGCACCACCTGGGTAAATTGGGTCCAGTCCTTCACCAAGTGGTCCCCCTCCAACTCTGTATCCTTCAACAAATCCCATGAGCACAACTT
GGCAAGCCCAGATTGCAAGAATGCTCTGAGCATGGATAAGGTTTGGGTTGCCAAGATAGTCAAGGCCACCCTCGGAGAATATTTGAGATCCAGCTTTGAA
CCAAACTGCCTCTCCGAACTTAACTCCATTCTTTGAAAGAATTTCAGGGAAGACACAACCAAGGGCACCAAGCATTGCCCATCTGCAGTGGATCACTTCA
AGCTCACGGTTCTTAGCAAATGTCTCTGGGTCAGCTGATAACCCAGCAGTGTCCCACCCATAGTCACCAGGGAATTCACCTGTCAGGTATGATGGGATTT
GGTCTGAGAATGGACCCAAGTACTTTGGGCGGTCAGGGCCATACCTGTTTTTAAAACCAAACCGTAGGTAATCAGATCAAGAAGCAGAAATATAGTTCCG
TTGCATGATTTCGCTTGTACATGCTATTTCTCTTTAAATGTATGGCTTAAAATAAGGCAGATTGCTGCTAAAATGTACTGTACAAATTGAAATTTTTAGT
CTGTTGTTTCACAATATTTGGGTTAACCATCAATGATTAGACTAAAAAGATCCTTATAACAAAATGCTGCTAGTTAGTACTAGGAAGTAGTAACAAAAGT
ATACCAGATGCTGGTAGGGGCACTTTTCACAGTTCTGCGCATGGTAACACGACCACCATCGAAAGCTCCGACTTTGCGTAAGAGCTCATTG