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Detailed information on CNT30560173


BLAST search results

BLAST vs Swiss-Prot:
sp|P14279|CB25_SOLLC, E-value = 4e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616538Actinidia chinensisSesamum indicum21.8440.1285.28197forward
CNT30268034Actinidia chinensisChenopodium quinoa15.1955.2489.05137forward
CNT30379168Actinidia chinensisManihot esculenta32.3725.3986.3292forward
CNT30631092Actinidia chinensisVigna unguiculata28.3822.6383.2256forward
CNT30488808Actinidia chinensisOlea europaea26.8346.3690.08242forward
CNT30711471Actinidia chinensisGlycine max5234.6480.38469forward
CNT30605341Actinidia chinensisGossypium raimondii32.0426.4988.24289forward
CNT30572302Actinidia chinensisVitis vinifera18.7424.4690.53169forward
CNT3028352Actinidia chinensisTheobroma cacao31.630.8186.32285forward
CNT3022417Actinidia chinensisPopulus trichocarpa16.8559.1488.16152forward
CNT30119335Actinidia chinensisCitrus clementina31.0442.5586.79280forward
CNT3035896Actinidia chinensisCucumis melo53.9954.1184.19487forward

Expression of CNT30560173

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLANVSGSADSPAVSHP*

>peptide 2 (30 aa)
MAWTKNPNIENIASRPFLISFTFNSANASG*

>peptide 3 (33 aa)
MMEFAQRMGPSTLGGPAHTCIVAGSQMVRFKLC*

Sequence

>CNT30560173
ATCTTAGATAAGCAGTCTCTGCAAGTAATATTACATCATTACTGATTCCATCCACAGGCAGAAAAAGTCAATCACACCAAGAAGCTTTAGTAATGTTTCA
GCTCACTCTTCATTTTCCGGGTACGAAGTTAGTGGCATAAGCCCATGCATTGTTGGCCACAGGATCAGCAAGGTGGTCAGAAAGGTTCTCAATTGGACCC
TTTCCAGTAACGATGGCCTGGACGAAGAATCCGAACATCGAAAACATTGCTAGCCGGCCGTTCTTGATCTCCTTCACCTTCAACTCTGCAAATGCCTCTG
GGTAATCAAGGCCACCTTCGGAGAATATTTGGGATCCGGCCTTGAACCAAACTGCCTCGCCGAACTTGACACCGTTCTTGGAAAGGATTTCGGGGAACAC
ACAGCCCAGTGCACCGAGCATGGCCCAACGGCAGTGGATCACTTCGAGCTCACGGTTCTTGGCAAACGTCTCGGGGTCTGCTGATAGCCCAGCAGTGTCC
CACCCATAGTCACCGGGGAATTCACCTGTCAAGTATGATGGAGTTTGCTCAGAGAATGGGCCCAAGTACTTTGGGCGGTCCGGCCCATACCTGTATAGTT
GCGGGATCACAAATGGTCAGATTCAAATTGTGTTGAGACAAGGATAGATCAATCAGTTGTGCTGGAAAGTTCTAGTTACTCTAAGATATTCATAACTTTG
CTTTCTAGTGGAATGGAAAATCTATCTGATTATAACTAGATCAATTTACTTATTCATAACTTTGATTTCTAGCGGAATAACAAAACTGTCTGATTATAAT
TGGATCAATTGCTATTGGCTTAGTGGTAAGTTGTGTGCCAGCCAAATCAGTGAAATTGTAATACAGATGTTATATTGATAACTACACATTATTGAAGTTA
CC