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Detailed information on CNT3035896


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317234Cucumis meloCorylus avellana21.2231.1686.39191forward
CNT30512563Cucumis meloJuglans regia31.3318.6584.75282forward
CNT30701193Cucumis meloQuercus lobata31.6722.6486.32285forward
CNT30500934Cucumis meloCoffea canephora23.3313.0985.24210forward
CNT30378910Cucumis meloManihot esculenta28.6722.2684.11258forward
CNT30526271Cucumis meloPhaseolus vulgaris2128.3887.83189forward
CNT30488808Cucumis meloOlea europaea29.3350.5785.98264forward
CNT30711471Cucumis meloGlycine max53.7835.7580.17484forward
CNT30560173Cucumis meloActinidia chinensis54.1153.9984.19487forward
CNT30172058Cucumis meloTrifolium pratense32.5619.3183.62293forward
CNT30605341Cucumis meloGossypium raimondii32.3326.6784.54291forward
CNT30648173Cucumis meloRosa chinensis30.7815.9584.84277forward
CNT30716010Cucumis meloMalus domestica golden16.2225.1786.99146forward
CNT30360562Cucumis meloLactuca sativa32.5632.1682.59293forward
CNT30409824Cucumis meloPapaver somniferum30.1140.3381.18271forward
CNT3028352Cucumis meloTheobroma cacao31.3330.4984.75282forward
CNT3022417Cucumis meloPopulus trichocarpa1656.0388.19144forward
CNT30326027Cucumis meloAsparagus officinalis32.2250.9782.76290forward
CNT30119335Cucumis meloCitrus clementina30.5641.7985.45275forward
CNT30112551Cucumis meloFicus carica29.5642.9783.46266forward

Expression of CNT3035896

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MHQAWPIGSGSPQAHGSLQKSRDLLTDRLCPIHSHRGTLQSGKMAFVQRMVPSTLGDQVHT*

>peptide 2 (81 aa)
MLKCGKTDCCFLQVSSFSGNKVGCISPCIVGNRICNMVKEILNRSLAGDDSLDKESEHGEHCQPSILKFLDLQLSKCIWVV*

>peptide 3 (29 aa)
MAHREWITSSSRFFAKVSGSADRPAVSHP*

>peptide 4 (42 aa)
NFRESLLEKLHQHMIFRRCLSVVKQIVVSYRFLHFPGTKLVA*

Sequence

>CNT3035896
TTAATTTCAGGGAGTCTCTACTTGAGAAATTACATCAACATATGATTTTCAGGAGATGCTTAAGTGTGGTAAAACAGATTGTTGTTTCCTACAGGTTTCT
TCATTTTCCGGGAACAAAGTTGGTTGCATAAGCCCATGCATTGTTGGCAACAGGATCTGCAACATGGTCAAAGAGATTCTCAATAGGTCCCTTGCCGGTG
ACGATAGCCTGGACAAAGAATCCGAACATGGAGAACATTGCCAGCCTTCCATTCTTAAGTTCCTTGACCTTCAACTCAGCAAATGCATCTGGGTAGTCTA
GACCACCCTCAGAGAAGATCTGAGAACCAGCCTTGAACCAAACTGATTCACCGAACTTGACGCCATTCTTTGCAAGGAGTTCAGGGAAGACACAACCTAA
TGCACCAAGCATGGCCCATCGGGAGTGGATCACCTCAAGCTCACGGTTCTTTGCAAAAGTCTCGGGATCTGCTGACAGACCGGCTGTGTCCCATCCATAG
TCACCGGGGAACTCTCCAGTCAGGTAAGATGGCGTTTGTTCAGAGAATGGTCCCAAGTACTTTGGGCGATCAGGTCCATACCTGATATGTCAAGAAAACA
GGCGTTTGAGTTTTAAATGGAACTTGATCTTTTTCTTTTTTAGCGCAAACTTAAACTTTTTCTTCTTTGTTCTTCCCCCTCTTAAAATTTATGAATGACT
AATACATGAAAATTTACTCCCCAATTAGATGAATTTTCCTACTTAACTGTGCTCACAATTCAATTAAATAAATGTTTAAACATCTTTTAATGGACTGTAC
TGAATGAACTGATCTTTTATTCAACCTATCATTGCAGGAAAGTACCATAGAGCATGGAAATGCAGAAAAAACCCGTTAAAGCACTAATTTTTGAACAGTT