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Detailed information on CNT3028352


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 4e-64

BLAST vs NONCODE:
NONSTUT002515, E-value = 2e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Theobroma cacaoJuglans regia30.718.7885.56284forward
CNT30701193Theobroma cacaoQuercus lobata27.8920.4988.76258forward
CNT30374000Theobroma cacaoArabidopsis thaliana23.2424.4983.72215forward
CNT30500934Theobroma cacaoCoffea canephora22.3812.9186.47207forward
CNT30268034Theobroma cacaoChenopodium quinoa11.5743.1590.65107forward
CNT30378910Theobroma cacaoManihot esculenta29.1923.387.41270forward
CNT30631092Theobroma cacaoVigna unguiculata30.1624.6786.02279forward
CNT30488808Theobroma cacaoOlea europaea28.4350.3886.31263forward
CNT30711471Theobroma cacaoGlycine max30.720.9784.86284forward
CNT30560173Theobroma cacaoActinidia chinensis30.731.4986.27284forward
CNT3085816Theobroma cacaoVigna radiata27.2439.584.13252forward
CNT30172058Theobroma cacaoTrifolium pratense30.718.7284.86284forward
CNT30313266Theobroma cacaoCamelina sativa27.1441.6983.27251forward
CNT3074696Theobroma cacaoBrassica juncea23.8943.8582.81221forward
CNT30605341Theobroma cacaoGossypium raimondii30.726.0393.66284forward
CNT30648173Theobroma cacaoRosa chinensis29.315.685.61271forward
CNT30204126Theobroma cacaoHelianthus annuus12.2222.0789.38113forward
CNT30716010Theobroma cacaoMalus domestica golden16.3226.0388.08151forward
CNT30409824Theobroma cacaoPapaver somniferum27.7838.2485.99257forward
CNT30572302Theobroma cacaoVitis vinifera17.9524.0287.95166forward
CNT3022417Theobroma cacaoPopulus trichocarpa16.5459.5388.24153forward
CNT30326027Theobroma cacaoAsparagus officinalis30.0548.8683.45278forward
CNT30119335Theobroma cacaoCitrus clementina29.341.1987.82271forward
CNT3035896Theobroma cacaoCucumis melo30.4931.3384.75282forward
CNT30112551Theobroma cacaoFicus carica27.5741.286.67255forward
CNT30114814Theobroma cacaoEutrema salsugineum23.5726.4682.11218forward

Expression of CNT3028352

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSLGQLIIQRCPTRSHQGILQLGMMGFGQRMDPSTLGGQGHTCFFVKL*

Sequence

>CNT3028352
CAGAGAACCATGCTTAAGTGCTTAGACCTGTGAAGTTTTGTTGCTTGATCTTAAGAAAGTCAAAGATATACTATTTCACGCACAAAAGATCTGAAATTTT
AATTATACAATAGCCCCAAAGATAAGCAGTTAAATTACATCTGCAGTCGAGATATTCAACACATGCCACGTAGTGATTAATTTTACAGCTTTCAAAGACA
TACCATTGATCTATCTAAGTTGTTCATTTTCCGGGGACAAAGTTAGTGGCATAAGCCCATGCATTGTTGGCCACCCTCGGAGAAGATTTGAGATCCAGCC
TTGAACCAAACTGCCTCTCCAAACTTGACACCGTTCCTTGAAAGAATTTCAGGGAAGACGCAGCCAAGGGCACCAAGCATAGCCCATCTGCAGTGGATCA
CCTCAAGCTCACGGTTCTTAGCAAATGTCTCTGGGTCAGCTGATAATCCAGCGGTGTCCCACCCGTAGTCACCAGGGAATTCTCCAGTTAGGTATGATGG
GATTTGGTCAGAGAATGGACCCAAGTACTTTGGGCGGTCAGGGCCATACCTGTTTTTTTGTCAAATTATAGGTCAAGTAATCAGATCATAAACCAGAAAT
ATAGTTCACTCTCTCATGTTTTTTCTCTACAAAATCGTTTTGGACATTAGATGTTAGATTTCCACGCAACAAAACGAAAAATGCTCCTAATGTTCAACTT
AGGCTTTGTCTGTCTCTTCGAACTATAACAAATAGTTGACATATATTTCAGTTGGCTTAATTTGAGCCTGATTGTGACTAGGCTCTGCTCCCGTACAAAC
TGTTTTTTTTTTTTCAAAGTATTATTGTTTCACAAGATTTGGATAAACTATATTGAATTAGACGGGAAATTGTTCATAAAAGATACTACCAGCTAGTACT
AGGAAGCAGCAAGAAAAATGTAATT