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Detailed information on CNT30500934


BLAST search results

BLAST vs Swiss-Prot:
sp|P27494|CB23_TOBAC, E-value = 1e-119

BLAST vs NONCODE:
NONSTUT002514, E-value = 2e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701193Coffea canephoraQuercus lobata20.9526.6981.25336forward
CNT3070976Coffea canephoraQuercus suber18.5258.4680.81297forward
CNT30378910Coffea canephoraManihot esculenta20.728.6581.93332forward
CNT30526271Coffea canephoraPhaseolus vulgaris11.1626.8886.03179forward
CNT30630954Coffea canephoraVigna unguiculata10.629.4687.65170forward
CNT30488808Coffea canephoraOlea europaea11.9136.5985.86191forward
CNT30708353Coffea canephoraGlycine max11.8523.9984.21190forward
CNT30561790Coffea canephoraActinidia chinensis21.3849.6482.8343forward
CNT3085816Coffea canephoraVigna radiata9.7924.6185.99157forward
CNT30510148Coffea canephoraSolanum lycopersicum11.9145.0585.34191forward
CNT30172025Coffea canephoraTrifolium pratense21.1329.3880.53339forward
CNT3062296Coffea canephoraArabidopsis lyrata8.1728.1788.55131forward
CNT30204126Coffea canephoraHelianthus annuus17.3954.4982.08279forward
CNT30625449Coffea canephoraDaucus carota17.2730.1183.03277forward
CNT30360562Coffea canephoraLactuca sativa12.6622.2885.71203forward
CNT30409824Coffea canephoraPapaver somniferum12.3429.4684.34198forward
CNT30572302Coffea canephoraVitis vinifera9.9823.1588.12160forward
CNT3028352Coffea canephoraTheobroma cacao13.0322.5986.6209forward
CNT3022417Coffea canephoraPopulus trichocarpa8.653.787.68138forward
CNT30119335Coffea canephoraCitrus clementina11.7828.7286.77189forward
CNT3035896Coffea canephoraCucumis melo13.0923.3385.24210forward
CNT30331118Coffea canephoraDioscorea rotundata11.5331.6282.7185forward
CNT30723501Coffea canephoraLupinus angustifolius17.7126.382.04284forward

Expression of CNT30500934

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MHMMCKLVTKCTINETIINSELSAYYLKSKDK*

>peptide 2 (43 aa)
MAWTKKPNIENIANRPFLISFTFNSANASGSSAKPNGSKAPPG*

>peptide 3 (38 aa)
MHQDHQPNPMGQKLLLDRSCLVLHQVALHQLCILLLSP*

>peptide 4 (79 aa)
SGHKVCGICPSIVGNRVGQMVYEVLNWAFSSNNGLDKEAEHREHCQSSILDLFHLQLSKCIRIISQTQWVKSSSWIDLV*

>peptide 5 (70 aa)
MSLGQLKAQQCPIRNHQGTHQSGMMEFVQRMGPSTWAYQVHTCCITQKLKFLNVDMITYKVAGKAHSRGV*

>peptide 6 (47 aa)
MLWAWMRISGKTQPKAPSIAHLQWITSNSRFLANVSGSAESPAVSHP*

Sequence

>CNT30500934
TCCGGGCACAAAGTTTGTGGCATATGCCCAAGCATTGTTGGTAACAGGGTCGGCCAAATGGTCTATGAGGTTCTGAATTGGGCCTTTTCCAGTAACAATG
GCTTGGACAAAGAAGCCGAACATCGAGAACATTGCCAATCGTCCATTCTTGATCTCTTTCACCTTCAACTCAGCAAATGCATCAGGATCATCAGCCAAAC
CCAATGGGTCAAAAGCTCCTCCTGGATAGATCTTGTCTAGTCCTTCACCAAGTGGCCCTCCACCAACTCTGTATCCTTCTATTAAGCCCATAAGTACGAC
TTGGCTGGCCCAGATTGCAAGGATGCTTTGGGCGTGGATGAGGATTTCCGGGAAGACGCAACCCAAAGCACCAAGCATAGCCCATCTACAGTGGATCACT
TCTAACTCACGGTTCTTGGCAAATGTCTCTGGGTCAGCTGAAAGCCCAGCAGTGTCCCATCCGTAATCACCAGGGAACTCACCAGTCAGGTATGATGGAG
TTTGTTCAGAGAATGGGCCCAAGTACTTGGGCCTATCAGGTCCATACCTGTTGTATCACTCAAAAACTCAAGTTCTTAAATGTTGACATGATAACATACA
AAGTAGCTGGAAAGGCACACTCTAGAGGTGTATAATTTTTTTTTTGAAAAAAAAAAAGAAGTTGTCATTATTTTTTTGAATTTGATCGTAACTTACTGGG
AGTTAATAAGAAATAATACTAGAAGGTATGGAAATTAAGAATTATTGGAAGTGATTGATAGTTGTGTGGTGTTAAAATCTTAATCATATAATAATAAAAG
TGGAAAGACACAAAGCGAGAAAAAGTTCTTACATCAACTACCAAGCATCATAGGAAGATATGAAAGCAGGAGTACTTACTGATTCTCAGAAAATTCAAAG
CCTTGGTCATTAAGGATAAACAAAAGAAAAACTATGGTAATTTTATGGGATGTTTTTGAAAACTTCTGCTATAGTTACTTTTATTTGAGATGGTGCCCGC
ACATGAAAATGTGAATAGAGAAAGTGTTAAAAGTTTTCTGAAAACATAGTCTTTTTTTAAAAAAAAAAACCCAAAATAGCTAATACAAACATTCTAACAT
GAATAATTAACATTTTTCATATGCTAGAATTGCTGAAATAGATATAGTCTGCATTGGGATGCAATAGCTGTATCAAGAAGTGCTAATATGAGCTTATTTC
TTTTTCTTAGAAATGCTGAGAGCAATCTTACAGGAGGAACAGGGTGCGAGGAAGAAAGAGTAAGCACATATTAAAATAAAAAATAAAAAATAAAAAAGAG
GAATCTTAAAACAGTTCAATAGATAAAAAGAATGAAAAATGTGAAACATATTCCTATTATTAGTGCCACAAGAGTAAAGTTGCATGCTTAGATCAAATAG
ACACGCATCTTCTATATTCTGAATTATTAATTAGACAAACAGTCTAATGACTAATTGATACAAGTAAATAATGCACATGATGTGTAAACTAGTAACAAAA
TGTACAATTAACGAGACAATTATCAATTCAGAGCTCAGCGCCTATTATCTCAAATCTAAAGACAAATAAAAGATGATAAATATACAATTGTAGTAGTTAC
CAAA