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Detailed information on CNT30572302


BLAST search results

BLAST vs Swiss-Prot:
sp|P27518|CB21_GOSHI, E-value = 4e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512563Vitis viniferaJuglans regia24.4611.1889.35169forward
CNT30701193Vitis viniferaQuercus lobata24.4613.4290.53169forward
CNT30500934Vitis viniferaCoffea canephora23.159.9888.12160forward
CNT30268034Vitis viniferaChenopodium quinoa15.0541.9486.54104forward
CNT30378910Vitis viniferaManihot esculenta24.4614.5888.76169forward
CNT30631092Vitis viniferaVigna unguiculata24.0214.6886.75166forward
CNT30488808Vitis viniferaOlea europaea23.7331.4289.63164forward
CNT30711471Vitis viniferaGlycine max24.0212.2688.55166forward
CNT30560173Vitis viniferaActinidia chinensis24.4618.7490.53169forward
CNT3085816Vitis viniferaVigna radiata2223.8286.84152forward
CNT30234046Vitis viniferaBrassica oleracea22.8727.2982.91158forward
CNT30510148Vitis viniferaSolanum lycopersicum20.6933.7383.92143forward
CNT30172058Vitis viniferaTrifolium pratense23.1510.5587.5160forward
CNT30612591Vitis viniferaArabis alpina24.0220.883.13166forward
CNT30605341Vitis viniferaGossypium raimondii24.0215.2290.36166forward
CNT30204126Vitis viniferaHelianthus annuus23.7332.0384.15164forward
CNT30409824Vitis viniferaPapaver somniferum23.323.9683.23161forward
CNT3028352Vitis viniferaTheobroma cacao24.0217.9587.95166forward
CNT3022417Vitis viniferaPopulus trichocarpa28.3676.2688.27196forward
CNT30119335Vitis viniferaCitrus clementina29.9631.4687.92207forward
CNT3035928Vitis viniferaCucumis melo23.7334.686.59164forward
CNT30723501Vitis viniferaLupinus angustifolius24.4615.6582.84169forward

Expression of CNT30572302

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MRCWQLDQQGGQRVLQMHQGHLPNQVGQKPHLGKLHPVPHQVGLHQHGILQRIP*

>peptide 2 (43 aa)
MSQDLLITQQCPTHSHQGIHRSGMMEFAQRMGPSTWGGLAGEC*

>peptide 3 (40 aa)
GNKGAGLISNTVVPSSSTSKLHHYQPNPQKTSSIKTNKVK*

Sequence

>CNT30572302
ATGGCAACAAAGGAGCTGGTCTCATTAGTAATACAGTAGTTCCAAGCAGTTCTACTAGCAAATTACATCATTACCAACCCAATCCACAGAAGACAAGTTC
AATAAAGACCAACAAGGTTAAGTAATGTTACAGCTGAAAAGGTGAATCTCACACTTATCTTCACTTGCCGGGGACAAAGTTGGTGGCATAAGCCCATGCG
TTGTTGGCAACTGGATCAGCAAGGTGGTCAACGAGTTCTGCAAATGCATCAGGGTCATCTGCCAAACCAAGTGGGTCAAAAGCCCCACCTGGGTAAATTG
CATCCAGTCCCTCACCAAGTGGGCCTCCACCAACACGGTATCCTTCAACGAATCCCATGAGCACAACTTGGCAGGCCCAGATTGCAAGGATGCTCTGGGC
ATGAACAAGCATTGCCCATCTGCAGTGAATGACCTCGAGCTCACGGTTCTTGGCGAATGTCTCAGGATCTGCTGATAACCCAGCAGTGTCCCACCCATAG
TCACCAGGGAATTCACCGGTCAGGTATGATGGAGTTTGCTCAGAGAATGGGCCCAAGTACTTGGGGCGGTCTGGCCGGCGAATGCTGATCTCTGGATTGC
AGAAGTTGCCATGATACTCAGCTAATCTTCTTTGTTGATGAGGTTTTGCTCTAAAGTTGCAAGGAGAATAGTGAAGACTAGGGAGATGGGT