Detailed information on CNT30101183


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004215, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Oryza rufipogonOryza sativa28.4718.75100168reverse complement
CNT30677945Oryza rufipogonSetaria viridis23.569.17100139forward
CNT30730496Oryza rufipogonCorchorus capsularis25.5913.8986.75151reverse complement
CNT30492881Oryza rufipogonOlea europaea23.5621.5587.77139forward
CNT30502643Oryza rufipogonNicotiana attenuata20.519.3487.6121forward
CNT30163195Oryza rufipogonPistacia vera19.1548.584.07113reverse complement
CNT30191576Oryza rufipogonSecale cereale23.7335.71100140reverse complement
CNT30297822Oryza rufipogonTriticum aestivum24.2434.71100143reverse complement
CNT30237740Oryza rufipogonBrassica oleracea25.7612.6882.89152reverse complement
CNT3077654Oryza rufipogonBrassica juncea25.7633.7882.89152forward
CNT3017923Oryza rufipogonZea mays24.2451.0795.1143forward
CNT30610163Oryza rufipogonGossypium raimondii25.5928.3884.77151forward
CNT30684722Oryza rufipogonTriticum urartu28.4715.7598.81168forward
CNT30364733Oryza rufipogonSorghum bicolor23.5656.9797.12139forward
CNT30319059Oryza rufipogonAsparagus officinalis23.917.3486.52141forward
CNT30151250Oryza rufipogonBrachypodium distachyon28.4727.2399.4168forward
CNT30604848Oryza rufipogonOryza punctata25.2545.5797.99149reverse complement

Expression of CNT30101183

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MYPNLYCSRVKPFFYATGKSDYEFPFLFA

>peptide 2 (32 aa)
RRLFFYQTYADQITSYNKKKSFSVSIPLPLIL*

>peptide 3 (78 aa)
EDCSFTKHMRIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSISSFGIWALLSSTYFFFALFFIYFISIFPSSSIPIL*

Sequence

>CNT30101183
TAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGA
GAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTTTGCTTTATTCTTTATTTATTTC
ATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTGTATGAATCTATATTATTCCATTCC
AATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGACAGTAAAAGCCAAAATAGACTAAATATAGCCTGAACGATCCTA
AAAGTCCCTCGAAGGAGATAATATAATAAAGAACCCAAAGCAGACGGTATCCTACTGCAAGGGTGGTCTTAAGAATCCAAAAGAGGTTGCTCAGAAGAGA
TAGATGTATCCCAACCTATATTGCTCTCGCGTAAAGCCTTTTTTTTACGCGACAGGAAAAAGTGACTATGAATTCCCCTTTTTGTTTGCG