Detailed information on CNT30297822


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Triticum aestivumOryza sativa85.4439.2999.72352forward
CNT30272397Triticum aestivumChenopodium quinoa21.124.7187.3687forward
CNT30730658Triticum aestivumCorchorus capsularis85.9245.188.42354reverse complement
CNT30198768Triticum aestivumPisum sativum38.3531.9287.34158forward
CNT30492881Triticum aestivumOlea europaea48.0630.786.36198reverse complement
CNT30502643Triticum aestivumNicotiana attenuata80.125.4884.24330reverse complement
CNT30163195Triticum aestivumPistacia vera27.4348.584.07113forward
CNT30173126Triticum aestivumTrifolium pratense22.336.5285.8792forward
CNT3082974Triticum aestivumBrassica juncea65.7831.8885.24271forward
CNT3017923Triticum aestivumZea mays62.3891.7996.89257reverse complement
CNT30610477Triticum aestivumGossypium raimondii75.9746.1789.14313reverse complement
CNT30232463Triticum aestivumAnanas comosus28.1649.1589.66116forward
CNT30684722Triticum aestivumTriticum urartu85.4432.99100352reverse complement
CNT30356763Triticum aestivumLactuca sativa65.785089.67271forward
CNT3056176Triticum aestivumAmborella trichopoda67.966.0380.36280reverse complement
CNT30319059Triticum aestivumAsparagus officinalis84.9543.0590350reverse complement
CNT30150789Triticum aestivumBrachypodium distachyon62.8631.3698.46259reverse complement
CNT30101183Triticum aestivumOryza rufipogon34.7124.24100143reverse complement
CNT30550344Triticum aestivumOryza brachyantha55.196.697.36227forward

Expression of CNT30297822

Peptides detected in this lncRNA

>peptide 1 (34 aa)
KLKRTVFSVYFPRSIATAGLMQSIGSYRYPFNTT*

Sequence

>CNT30297822
CGAAATTGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATATAGATATCCCTTCAACAC
AACATAGGTCATCGAAAAGATCTCGGACGACTCACCAAAGCACGAAAGCCAGTTAGAAAATGGATTCCTATTTGAAGAGTGCCTAACCGCATGGATAAGC
TCACATTAACCCGTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGGGAAGAAATTGGAATGGAATAATATAGATTCATACAGAGGAAAAG
GTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGAAGAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCCAAAAAAATAAGTC
GAAGATAGAAGA