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Detailed information on CNT30610163


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524944Gossypium raimondiiPhaseolus vulgaris44.7423.983.61238forward
CNT30199301Gossypium raimondiiPisum sativum22.5640.9690120reverse complement
CNT30492881Gossypium raimondiiOlea europaea27.2622.4894.48145forward
CNT30710142Gossypium raimondiiGlycine max23.8728.4889.76127forward
CNT30158332Gossypium raimondiiPistacia vera25.7533.5891.97137reverse complement
CNT30284960Gossypium raimondiiTriticum aestivum43.4226.0185.28231forward
CNT30384007Gossypium raimondiiTriticum turgidum39.123.8384.13208forward
CNT30569656Gossypium raimondiiActinidia chinensis27.2617.2294.48145forward
CNT3083498Gossypium raimondiiVigna radiata34.5979.3183.15184reverse complement
CNT30237740Gossypium raimondiiBrassica oleracea28.212.5194150reverse complement
CNT3077654Gossypium raimondiiBrassica juncea28.233.3394150forward
CNT3018194Gossypium raimondiiZea mays40.0436.3585.92213forward
CNT30228329Gossypium raimondiiAnanas comosus32.1482.6190.06171forward
CNT30213923Gossypium raimondiiHelianthus annuus21.0521.4191.96112reverse complement
CNT30364733Gossypium raimondiiSorghum bicolor16.1735.2586.0586forward
CNT30355468Gossypium raimondiiLactuca sativa43.6118.9789.22232forward
CNT30416238Gossypium raimondiiPapaver somniferum43.6130.2987.93232forward
CNT30324879Gossypium raimondiiAsparagus officinalis36.0954.787.5192reverse complement
CNT30151250Gossypium raimondiiBrachypodium distachyon22.1819.1285.59118forward
CNT30101183Gossypium raimondiiOryza rufipogon22.182086.44118forward
CNT30604848Gossypium raimondiiOryza punctata32.3352.683.14172reverse complement

Expression of CNT30610163

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MRFSPHTAPRSILSKSLGPFPCSKISSLLPLCLEE*

>peptide 2 (75 aa)
KIEFGFLEVIVENLTNKSPLLPLYRIVNEIFTSYGSSFNSFEVIGSFSLFKNLLSSSTLSRRITKTNSVMFSCFN*

>peptide 3 (30 aa)
MFQLNSFHFFIILKRGVFLPNICRSNHTIL*

Sequence

>CNT30610163
AAGATAGAGTTTGGTTTTCTGGAGGTGATAGTGGAAAATTTGACAAATAAGTCACCCTTACTGCCACTCTACAGAATCGTAAATGAGATTTTCACCTCAT
ACGGCTCCTCGTTCAATTCTTTCGAAGTCATTGGGTCCTTTTCCTTGTTCAAAAATCTCCTCTCTTCTTCCACTCTGTCTCGAAGAATAACTAAGACAAA
TTCAGTCATGTTTTCATGTTTCAATTAAACAGTTTCCATTTTTTTATTATTCTCAAAAGAGGAGTTTTTTTACCAAACATCTGCAGATCCAATCACACGA
TCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCCCTTTGCACCTCATTCTTCGAGAATTAGAAAGATCCTTTTCAAGTTTGAATTTGTTCATTTGG
AATCTGGGTTCTTCTACTTCATTTTTATTTACTTATTTATCATTTTTATTATTTTCCCTCTTTATTTTATTTTATTTTATTTTATTCCCTTCCATCATTC
GCTAAGTCCCATAGGTTTGATCTTATAGAATC