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Detailed information on CNT30677945


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9D1|RR7_LOLPR, E-value = 2e-58

BLAST vs NONCODE:
NONORUT004214, E-value = 1e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Setaria viridisOryza sativa23.740.0798.89359reverse complement
CNT30730658Setaria viridisCorchorus capsularis23.3745.188.14354forward
CNT30492881Setaria viridisOlea europaea14.9235.0486.73226forward
CNT30502643Setaria viridisNicotiana attenuata21.7825.4884.24330forward
CNT30163195Setaria viridisPistacia vera7.4648.584.07113reverse complement
CNT3083498Setaria viridisVigna radiata12.0878.8884.15183reverse complement
CNT30237740Setaria viridisBrassica oleracea19.2124.2779.73291forward
CNT3082974Setaria viridisBrassica juncea17.8931.8885.98271reverse complement
CNT30610477Setaria viridisGossypium raimondii20.6646.1788.5313forward
CNT30228329Setaria viridisAnanas comosus13.4798.5591.18204forward
CNT30684722Setaria viridisTriticum urartu29.1741.4297.74442forward
CNT30364733Setaria viridisSorghum bicolor14.1387.795.79214forward
CNT30319059Setaria viridisAsparagus officinalis23.143.0589.71350forward
CNT30150789Setaria viridisBrachypodium distachyon17.131.3697.3259forward
CNT30101183Setaria viridisOryza rufipogon9.4424.2498.6143forward
CNT30604848Setaria viridisOryza punctata19.690.8395.96297reverse complement
CNT30550344Setaria viridisOryza brachyantha14.9896.696.92227reverse complement

Expression of CNT30677945

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYLTPGKSLTLPPLTNTTECSCKLWPIPGI*

>peptide 2 (39 aa)
MISVFSFFSFLFVSKKISSDSPSIDSFPIEMYGSMCLHT*

>peptide 3 (38 aa)
MTYVVLKGYLYDPIDCIRPAVAIERGKYTEKTVLFNFDY

>peptide 4 (89 aa)
MIKGEDCSFTKHMRIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSISSFFEFPFLHFESGLFYLRLLFLALFFIYFISIFPSSSIPIL*

>peptide 5 (64 aa)
MDPCVYIPRFCSWINENAQELYLPLPFYDALPCLDPISIGTFRVDPFLLRLVFTPILGVTLRIA*

>peptide 6 (30 aa)
REGLVDHDFCFLFLFLFICFEKDIVRFSFY*

>peptide 7 (38 aa)
MRFSPHTAPRSIISKGSFSSFESLRPSSTPSRRLTKTN*

>peptide 8 (36 aa)
MLTNRLRKIGSDFAVLFSAVPRRDDSLLRQHLGFLE*

Sequence

>CNT30677945
CGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTATTTGTTTCGAAAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTT
CCGATCGAGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGATTAACGAAAATGCGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAT
GCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTA
TTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTC
TTTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCGGTTCTTTTTTCTGCAGTACCTCGACGTGACGATTCT
TTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTG
TAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGG
TTGATAGTGGAAAAGTCGACAGATAAGTCATCCTTACTGTCCCTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTATTTCG
AAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAA
CACTTTCCATTTATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAAT
CCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTTTCGAGTTTCCATTTCTTCATTTTGAATCTGGGCTCTT
CTATCTTCGACTTCTTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAA
TAGAGAACTTTTTCCTCTGTATGAATCGATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGT
TAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCCTTTCGATGA
CCTATGTTGTCTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCAGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTT
CAATTTCGATTATCT