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Detailed information on CNT30502643


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXP9|YCF15_HELAN, E-value = 8e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Nicotiana attenuataOryza sativa25.4836.8384.55330reverse complement
CNT30677945Nicotiana attenuataSetaria viridis25.4821.7884.24330forward
CNT3021516Nicotiana attenuataCitrullus lanatus37.7626.5986.71489forward
CNT30730658Nicotiana attenuataCorchorus capsularis37.6862.1784.63488forward
CNT30492881Nicotiana attenuataOlea europaea37.2274.7386.72482forward
CNT30158332Nicotiana attenuataPistacia vera8.7327.792.04113reverse complement
CNT30191576Nicotiana attenuataSecale cereale25.4884.1884.24330reverse complement
CNT30297822Nicotiana attenuataTriticum aestivum25.4880.184.24330reverse complement
CNT30543269Nicotiana attenuataBrassica napus20.939.1687.08271forward
CNT3082974Nicotiana attenuataBrassica juncea19.9230.3586.43258reverse complement
CNT3017923Nicotiana attenuataZea mays18.384.6484.81237forward
CNT30610477Nicotiana attenuataGossypium raimondii24.1746.1788.5313forward
CNT30232463Nicotiana attenuataAnanas comosus6.5636.0291.7685reverse complement
CNT30684722Nicotiana attenuataTriticum urartu25.4830.9384.24330forward
CNT30356763Nicotiana attenuataLactuca sativa32.3677.3188.07419reverse complement
CNT30644293Nicotiana attenuataCannabis sativa6.7227.194.2587forward
CNT30319059Nicotiana attenuataAsparagus officinalis37.359.4184.06483forward
CNT30150789Nicotiana attenuataBrachypodium distachyon14.2922.486.49185forward
CNT30101183Nicotiana attenuataOryza rufipogon9.3420.5187.6121forward
CNT30578031Nicotiana attenuataOryza barthii13.5933.484.66176reverse complement
CNT30550344Nicotiana attenuataOryza brachyantha12.0566.3885.26156reverse complement
CNT30111895Nicotiana attenuataFicus carica5.7921.078875reverse complement

Expression of CNT30502643

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLKGYLSNSIDCVKPAVATEPGKVYRKDNSFLLY*

>peptide 2 (45 aa)
KDELYFLSKIFLDQSLCPSFFKNKKILFKFEFVHLESGFFYFIFI*

>peptide 3 (53 aa)
MSIRMNHPFHGVNFIFATSFWIILYSKYVAATQAIFGQELLKRRPRRPNTAHI*

>peptide 4 (54 aa)
MNCWHQSYILSLWTEEKRGSAGRGVYHERSKEVNLFQIYNMDSGNVVGLSCRSE*

>peptide 5 (67 aa)
LKTNYIFCQRSFLINPFVPHSSRIRRSFSSLNLFIWNLGSSTSYLFNMNIFPLFFLYHSLSHIGLIL*

Sequence

>CNT30502643
TTAAAGACGAATTATATTTTTTGTCAAAGATCTTTCTTGATCAATCCCTTTGTCCCTCATTCTTCAAGAATAAGAAGATCCTTTTCAAGTTTGAATTTGT
TCATTTGGAATCTGGGTTCTTCTACTTCATATTTATTTAATATGAATATATTCCCTCTCTTTTTTTTATATCATTCCTTAAGTCACATAGGTTTGATCCT
GTAGAATTTTACCCATTTTCTCATTGAACGAAAGGTACGAAATAAATCAGATTGATAAAAGTACCATGTGAAATCTTCGATTTTTCCCCTTCCTCGATCC
CTATCCCATAGGTTAGGTACAATGTTTGAATCAATAGAGAACCTTTTCTTCTGTATGAATTGATATTATTCCATTCCGAATCCTTCTCGATACCTCCCAA
GAAAAATCTCGAATTTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCATTTATGCACTCTTTGAATAGGAATCCGTTTTCTGAAAGATCCTG
GCTTTCGTACTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGAAAGGATATCTATCTAATTCGATCGATTGCGTAAAGCCTGCGGTAGCAACG
GAACCAGGAAAAGTATACAGAAAAGACAATTCTTTTCTATTATATTAGTATTTTCTATTATATTAGATATATTAGACTATTATATTAGATTAGTATTAGT
TAGTGATCCCGACTTAGTGAGTCTGATGAATTGTTGGCACCAGTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAAGGGGCTCGGCGGGAAGAGGAGTG
TACCATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGTAGTTGGACTCTCATGTCGATCCGAATGAATCATCCTTT
CCACGGAGTTAACTTCATTTTTGCCACTTCTTTCTGGATAATATTATACTCGAAATATGTCGCGGCGACACAAGCCATTTTTGGTCAAGAACTACTAAAA
AGAAGACCAAGAAGACCAAACACCGCACACATATAGCATCTCTTTTTGCTAATATGTAAATAGCTATGTCATACCTGTTGTAACTACTATGGCACTTTAA
GCATCCCTTAATCTGACGCTCTCATAGATGTAAATGTGTATTTTGATCAAAACCGTATGTAAATAGTCATCTACCAATTAGCATACAATATCGTCTACTT
ACTTTGTTGGGCCCATATACAAAATTAAATAATGTTGGGCCCGTGCTGGCACGGGCTGAGCCAACCTAGTATTCGTACTATACAATGGTCTGCAC