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Detailed information on CNT30237740


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Brassica oleraceaOryza sativa20.9328.0182.07251forward
CNT30677945Brassica oleraceaSetaria viridis24.2719.2179.73291forward
CNT30730496Brassica oleraceaCorchorus capsularis27.5230.3690.61330forward
CNT30492881Brassica oleraceaOlea europaea20.4337.9891.02245reverse complement
CNT30158332Brassica oleraceaPistacia vera15.6846.0886.17188forward
CNT3083498Brassica oleraceaVigna radiata4.9225.4391.5359forward
CNT30543269Brassica oleraceaBrassica napus26.4410.71100317reverse complement
CNT3077654Brassica oleraceaBrassica juncea21.156.22100253reverse complement
CNT3018194Brassica oleraceaZea mays22.9446.9379.27275forward
CNT30610163Brassica oleraceaGossypium raimondii27.6162.2284.89331reverse complement
CNT30228329Brassica oleraceaAnanas comosus6.2636.2390.6775forward
CNT30684722Brassica oleraceaTriticum urartu20.9323.5282.47251reverse complement
CNT30364733Brassica oleraceaSorghum bicolor5.7528.2886.9669forward
CNT30355468Brassica oleraceaLactuca sativa27.5226.9883.03330reverse complement
CNT30416238Brassica oleraceaPapaver somniferum18.1828.4684.4218forward
CNT30644293Brassica oleraceaCannabis sativa6.8425.5591.4682reverse complement
CNT30324879Brassica oleraceaAsparagus officinalis24.7784.6282.49297reverse complement
CNT30151250Brassica oleraceaBrachypodium distachyon14.1827.5582.35170reverse complement
CNT30101183Brassica oleraceaOryza rufipogon12.6825.7682.89152reverse complement
CNT30604848Brassica oleraceaOryza punctata17.664.5380.57211forward

Expression of CNT30237740

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTSKELNEEPYEIFTSYGSWFNSFEVIGSLSSFANLLRPEE*

>peptide 2 (32 aa)
MRFSPHTAPGSILSKSLGPFPRSRISSVPKSN*

>peptide 3 (39 aa)
MRGKEIDRERSLVLIIRSCDWTRRCLVKRIILSFENNQK*

Sequence

>CNT30237740
TGGGAAAGCGATAGAGAAAGAGAAAAAAAAAACGAAGATTTCACATAGTGATTTTTTTTTGATCAAAAAAAAATATGATTGAATTTATTTCGTACCCTTC
GCTCAATGAGAACATGGGTCAGATTCTATAGGATCAAACCTATGGGACTTAAGAATGATGGAAGGGAATAAAATAAAAAAAGAAATCAAATAAAGAAATA
ATAAGTAAATAAAAATGAAGTAGAAGAACCCAGATTACAAATGAACAAATTCAAACTTGAAAAAGTCTCTTTCTGATTCTCGAAGAATGAGGGGCAAAGA
GATTGATCGAGAAAGATCTCTTGTTCTTATTATAAGATCGTGTGATTGGACCCGCAGATGTTTGGTAAAAAGAATAATCTTATCCTTTGAGAATAATCAA
AAATAGAAAGTGTTCAATTGGAACATGAAAACGTGACCGAGTTTATCCTAGTTACTCTTCGGGACGGAGGAGATTCGCGAACGAGGAAAGGGACCCAATG
ACTTCGAAAGAATTGAACGAGGAGCCGTATGAGATTTTCACCTCATACGGCTCCTGGTTCAATTCTTTCGAAGTCATTGGGTCCCTTTCCTCGTTCGCGA
ATCTCCTCCGTCCCGAAGAGTAACTAGGATAAACTCGGTCACGTTTTCATGTTCCAATTGAACACTTTCTATTTTTGATTATTCTCAAAGGATAAGATTA
TTCTTTTTACCAAACATCTGCGGGTCCAATCACACGATCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCTCTTTGCCCCTCATTCTTCGAGAATC
AGAAAGAGACTTTTTCAAGTTTGAATTTGTTCATTTGTAATCCGGGTTCTTCTACTTCATTTTTATTTACTTATTATTTCTTTATTTTTCCTCTCTTTTC
TTTATTTGATTTCTTTTTTGATTTTATTTTCTTCCATCATTCTTAAGTCCCATAGGTTTGATCCTATAGAATCTGACCCATGTTCTCATTGAGCGAAGGG
TACGAAATAAATTCAATCATATTTTTTTTTGATCAAAAAAAAATCACTATGTGAAATCTTCGTTTTTTTTTTCTCTTTCTCTATCGCTTTCCCATAAGTA
CAGCACTTGTTGAATCGATAGAGAACCTTTTCTTCTGTATCGATATGAATCCATTATGAATCGATATTATTACATTCCAATTCCTTACCAATATCCCTC