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Detailed information on CNT30730496


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000540, E-value = 1e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30492881Corchorus capsularisOlea europaea25.342.6493.45275reverse complement
CNT30158332Corchorus capsularisPistacia vera12.4233.0993.33135forward
CNT3083498Corchorus capsularisVigna radiata15.2771.5587.95166forward
CNT30237740Corchorus capsularisBrassica oleracea31.5528.6190.09343reverse complement
CNT30364733Corchorus capsularisSorghum bicolor7.9135.2588.3786reverse complement
CNT30416238Corchorus capsularisPapaver somniferum17.6625.0792.71192reverse complement
CNT30101183Corchorus capsularisOryza rufipogon13.5224.9286.39147reverse complement
CNT30604848Corchorus capsularisOryza punctata31.19103.6784.37339forward

Expression of CNT30730496

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MESVQLEHENVTEFVLVTLRDRVEEGRRFSNEEKDPMTSKELNEEPYEVKISCTV

>peptide 2 (63 aa)
MNKFKLEKDLSDSRRMRGKGIDRERSLVLIIRSCDWIRRCLVKKIFSFENNQKWKVFNWNMKT*

>peptide 3 (34 aa)
MLYLWDRERGKNRRFHTVLLIRKTNLIYFVPLAQ*

Sequence

>CNT30730496
CAATCCTCTTCCCGCTGAGCCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTAGGACTGGCGCCAATAGCTAATCACGGAAGAAAGGACTCAC
TGAGCCGGGATCACTAACTAATACTAATCTAATACTAATAGAATAGAATACTAATCTAATACTAATTCTAATACTAATAGAATAGAAAAAATAGAATAGA
AAATACTAATAGAATAGAAAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCTTTACGCAATCGATCGGATCATATAGA
TATCCCTTCAACACAACATAGGTCGTCGAAAGGATCTCGGAGACTCACCAAAGCACGAAAGCCAGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTG
CATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTGGGATCCAATTCGGGATTTTCCTTGGGGGGTATCAGTAAGGAATTGGAATGTTACTCTATT
GATTCAAATGCTGTACCTATGGGATAGAGAAAGAGGAAAAAACCGAAGATTTCACACAGTGCTTTTGATTCGAAAAACCAATCTGATTTATTTCGTACCC
CTCGCTCAATGAGAAAATGGGTCAGATTCTATAGGATCAAACCTATGGGACTTAAGGAATGATAGGAAGGGAATAAAATAAAAAAAAAGAAATAAAAAAA
AGAGGGGAAAAAAAAATAATAAATAAGTAAATAAAAATGAAGTAGAAGAACCCAGATTCCAAATGAACAAATTCAAACTTGAAAAGGATCTTTCTGATTC
TCGAAGAATGAGGGGCAAAGGGATTGATCGAGAAAGATCTCTTGTTCTTATTATAAGATCGTGTGATTGGATCCGCAGATGTTTGGTAAAAAAAATCTTC
TCTTTTGAGAATAATCAAAAATGGAAAGTGTTCAATTGGAACATGAAAACGTGACTGAATTTGTCCTAGTTACTCTTCGGGACAGAGTGGAAGAAGGGAG
GAGATTCTCGAACGAGGAAAAGGACCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCT