Detailed information on CNT30364733


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Sorghum bicolorOryza sativa92.2125.1195.56225reverse complement
CNT30677945Sorghum bicolorSetaria viridis98.3615.8495.83240forward
CNT30730496Sorghum bicolorCorchorus capsularis95.921.5382.48234reverse complement
CNT30524944Sorghum bicolorPhaseolus vulgaris24.596.0286.6760forward
CNT30492881Sorghum bicolorOlea europaea90.5734.2683.26221forward
CNT30284960Sorghum bicolorTriticum aestivum52.0514.390.55127forward
CNT30384007Sorghum bicolorTriticum turgidum25.417.198.3962forward
CNT3083498Sorghum bicolorVigna radiata24.5925.8686.6760reverse complement
CNT30237740Sorghum bicolorBrassica oleracea28.285.7586.9669reverse complement
CNT3077654Sorghum bicolorBrassica juncea28.2815.3386.9669forward
CNT3018194Sorghum bicolorZea mays78.6932.7695.31192forward
CNT30610163Sorghum bicolorGossypium raimondii35.2516.1786.0586forward
CNT30684722Sorghum bicolorTriticum urartu10022.8793.44244forward
CNT30355468Sorghum bicolorLactuca sativa90.1617.9982.73220forward
CNT30416238Sorghum bicolorPapaver somniferum58.6118.6783.92143forward
CNT30324879Sorghum bicolorAsparagus officinalis92.6264.3983.19226reverse complement
CNT30150789Sorghum bicolorBrachypodium distachyon62.318.496.71152reverse complement
CNT30101183Sorghum bicolorOryza rufipogon56.9723.5697.12139forward
CNT30604848Sorghum bicolorOryza punctata97.9573.0992.05239reverse complement

Expression of CNT30364733

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIKGEDFSFTKHMRIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSIPSFC

Sequence

>CNT30364733
GAGTCTCCGCCCTTCTTCCACTCCGTCCTGAAGACTAACTAAGACCAATTGAGTCACGTTTTTATGTTCTCATTGAGCAGTTTTCATTTATGATTAAAGG
AGAAGATTTTTCTTTTACCAAACATATGCGAATCAAATCGCGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAG
AATCAGAAGGATCCTTTTCGAGTTTCCATTCCTTCATTTTGCAT