« Back to Oryza sativa search


Detailed information on CNT30690834


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXP9|YCF15_HELAN, E-value = 6e-15

BLAST vs NONCODE:
NONOSAT000540, E-value = 3e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677945Oryza sativaSetaria viridis38.6222.8498.84346reverse complement
CNT3021516Oryza sativaCitrullus lanatus39.9619.4788.83358reverse complement
CNT30730658Oryza sativaCorchorus capsularis39.5145.188.7354reverse complement
CNT30492881Oryza sativaOlea europaea28.3539.3886.22254reverse complement
CNT30502643Oryza sativaNicotiana attenuata36.8325.4884.55330reverse complement
CNT30297822Oryza sativaTriticum aestivum38.6283.9899.71346forward
CNT3083498Oryza sativaVigna radiata6.5825.4391.5359forward
CNT30237740Oryza sativaBrassica oleracea28.0120.9382.07251forward
CNT30610477Oryza sativaGossypium raimondii34.9346.1789.46313reverse complement
CNT30232463Oryza sativaAnanas comosus12.8348.7394.78115forward
CNT30684722Oryza sativaTriticum urartu38.6232.4399.71346reverse complement
CNT30364733Oryza sativaSorghum bicolor25.1192.2195.56225reverse complement
CNT30319059Oryza sativaAsparagus officinalis39.0643.0590.29350reverse complement
CNT30101183Oryza sativaOryza rufipogon18.7528.47100168reverse complement
CNT30578031Oryza sativaOryza barthii18.0830.7497.53162forward
CNT30604848Oryza sativaOryza punctata26.2371.8796.17235forward

Expression of CNT30690834

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKKWKLEKDPSDSQRMRGKGIDTEKDFFLL*

Sequence

>CNT30690834
CAGAATCCATGTTCCATATTTGAAGAGGGTTGACCTCTGTGCTTCTCTCATGGTACAATCCTCTTCCTGCTGAGCCCCCTTTCTCCTCGGTCCACAGAGA
AAAAATGGAGGACTGGTGCCGACAGTTCATCACGGAAGAAAGAACTCACAGAGCCGGGATCGCTAACTAATAGAATAGTACTACTAACTAATACTAATAT
ATAGAAATAGATATCTAGAAATAGAAACAACTAATATATAGATAATCGAAATTGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCG
CGGGTCTTATGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAAGCCAGTT
AGAAAATGGATTCCTATTTGAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTC
GGGAAGAAATTGGAATGGAATAATATAGATTCATACAGAGGAAAAGGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGAAGAGGGA
AAAATCGAAATGAAATAAATAAAGAATAAAGCAAAAAAAAAATAAGTCGAAGATAGAAGAGCCCAGATTCCAAATGAAGAAATGGAAACTCGAAAAGGAT
CCTTCTGATTCTCAAAGAATGAGGGGCAAGGGGATTGATACCGAGAAAGATTTCTTCTTATTATAAGACGTGATTTGATCCGCATATGTTTGGTAAAAGA
ACAATCTTCTCCTTTAATCATAAATGGAAAGTGTTCAATTAGAACATGAAAACGTGACTCAATTGGTCTTAGTTAGTCTTCGGGACGGAGTGGAAG