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Detailed information on CNT30151250


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30198768Brachypodium distachyonPisum sativum19.6124.4486.78121forward
CNT30492881Brachypodium distachyonOlea europaea27.0725.8986.23167forward
CNT30158332Brachypodium distachyonPistacia vera13.9421.0883.7286forward
CNT30237740Brachypodium distachyonBrassica oleracea27.5514.1882.35170forward
CNT3077654Brachypodium distachyonBrassica juncea27.5537.7882.35170forward
CNT30610163Brachypodium distachyonGossypium raimondii24.4728.3884.11151forward
CNT30320661Brachypodium distachyonAsparagus officinalis18.4852.0588.6114forward
CNT30101183Brachypodium distachyonOryza rufipogon27.2328.4799.4168forward

Expression of CNT30151250

Peptides detected in this lncRNA

>peptide 1 (90 aa)
KGEDCSFTKHMRIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSVSSFGIWALLSSTYFFLLYSLFIPFQFLLETSQEKSRIGSKIDGLM*

>peptide 2 (30 aa)
MKKRKLEKDPSDSQRMRGKGIDTEKDFFLL*

Sequence

>CNT30151250
TTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTTGCCCCTCATT
CTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCGTTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTTGCTTTATTCTTTATTT
ATTCCATTCCAATTTCTTCTCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCAGTTAGAAAATGG
ATTCCTATTTGAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGAGAAGAAA
TTGGAATGGAATAAATAAAGAATAAAGCAAAAAAAAATAAGTCGAAGATAGAAGAGCCCAGATTCCAAATGAAGAAACGGAAACTCGAAAAGGATCCTTC
TGATTCTCAAAGAATGAGGGGCAAGGGGATTGATACCGAGAAAGATTTCTTCTTATTATAAGACGTGATTTGATCCGCATATGTTTGGTAAAAGAACAAT
CTTCTCCTTTAATCATA