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Detailed information on CNT30684722


BLAST search results

BLAST vs Swiss-Prot:
sp|A4GYN8|RR12B_POPTR, E-value = 2e-22

BLAST vs NONCODE:
NONORUT004214, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Triticum urartuOryza sativa31.5837.6199.7337reverse complement
CNT30677945Triticum urartuSetaria viridis43.7730.8397.86467forward
CNT3021516Triticum urartuCitrullus lanatus27.4615.9391.47293forward
CNT30730658Triticum urartuCorchorus capsularis32.4344.0888.15346forward
CNT30524944Triticum urartuPhaseolus vulgaris22.42484.52239forward
CNT30199301Triticum urartuPisum sativum13.2148.1291.49141reverse complement
CNT30492881Triticum urartuOlea europaea25.7742.6487.27275forward
CNT30502643Triticum urartuNicotiana attenuata30.0824.7984.11321forward
CNT30710142Triticum urartuGlycine max22.0252.6983.83235forward
CNT30163195Triticum urartuPistacia vera10.5948.584.07113reverse complement
CNT30191576Triticum urartuSecale cereale31.385.2100334reverse complement
CNT30297822Triticum urartuTriticum aestivum31.5881.8100337reverse complement
CNT30384007Triticum urartuTriticum turgidum26.832.7698.6286forward
CNT30569656Triticum urartuActinidia chinensis21.3727.0893.86228forward
CNT3083498Triticum urartuVigna radiata17.3479.7483.24185reverse complement
CNT30543269Triticum urartuBrassica napus46.7716.8684.97499forward
CNT30237740Triticum urartuBrassica oleracea23.5220.9382.47251reverse complement
CNT3082974Triticum urartuBrassica juncea25.431.8885.24271reverse complement
CNT3018194Triticum urartuZea mays39.3671.6797.62420forward
CNT30610477Triticum urartuGossypium raimondii28.5844.9988.85305forward
CNT30364733Triticum urartuSorghum bicolor22.8710093.44244forward
CNT30355468Triticum urartuLactuca sativa46.240.3187.63493forward
CNT30416238Triticum urartuPapaver somniferum34.6848.391.89370forward
CNT3056176Triticum urartuAmborella trichopoda26.246.0380.36280forward
CNT30319059Triticum urartuAsparagus officinalis32.0542.0789.77342forward
CNT30150789Triticum urartuBrachypodium distachyon24.2731.3698.46259forward
CNT30101183Triticum urartuOryza rufipogon15.7528.4798.81168forward
CNT30604848Triticum urartuOryza punctata31.58103.0694.36337reverse complement
CNT30550344Triticum urartuOryza brachyantha21.2796.697.36227reverse complement

Expression of CNT30684722

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRFSPHTAPRSILSKGSFSSFESLRPSSTPSRRLTKTN*

>peptide 2 (81 aa)
MIKGEDCSFTKHMQIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSISSFGIWALLSLTYFFGFILYLFHFDFPSSSIPIL*

>peptide 3 (74 aa)
MTYVVLKGYLYDPIDCIRPAVAIERGKYTEKTVLFNFDYLYISSFLFLDIYFYILVLVSSTISYRSRLCEFFLP*

Sequence

>CNT30684722
TAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGG
TTGATAGTGGAAAAGTCGACAGATAAGTCACCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCG
AAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCATGTTCTAATTGAA
CACTTTCCATTTATGATATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCAGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTA
TCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTGGAATCTGGGCTCTTCTATCTTTGACTTATTTT
TTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACCTTTTCCTCTG
TATGAATCTATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATG
CGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGG
ATATCTATATGATCCGATCGATTGCATAAGACCCGCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATAT
ATTAGTTCATTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGTAGTACTATTAGTTACCGATCCCGGCTCTGTGAGTTCTTTCTTCCGT
GATGAACTGTCGGCACCAGTCCTACATTTTTTTCTCTGTGGACCGAGGAGAAAGGGGGCTCAGCAGG