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Detailed information on CNT3017923


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691007Zea maysOryza sativa101.7979.8397.54285reverse complement
CNT30730658Zea maysCorchorus capsularis94.6433.7685.66265forward
CNT30198768Zea maysPisum sativum40.7123.0386.84114reverse complement
CNT30502643Zea maysNicotiana attenuata84.6418.384.81237forward
CNT3091171Zea maysSolanum tuberosum20.718.5891.3858forward
CNT30191576Zea maysSecale cereale90.7164.896.85254reverse complement
CNT30297822Zea maysTriticum aestivum101.7969.1797.19285reverse complement
CNT30173126Zea maysTrifolium pratense356.9586.7398reverse complement
CNT3082974Zea maysBrassica juncea52.1417.1887.67146reverse complement
CNT30610477Zea maysGossypium raimondii8033.0485.71224forward
CNT30232463Zea maysAnanas comosus36.7943.6489.32103reverse complement
CNT30356763Zea maysLactuca sativa85.7144.2887.5240reverse complement
CNT3056176Zea maysAmborella trichopoda48.932.9583.21137forward
CNT30319059Zea maysAsparagus officinalis93.2132.187.74261forward
CNT30150789Zea maysBrachypodium distachyon62.521.1998.29175forward
CNT30101183Zea maysOryza rufipogon61.0728.9895.91171forward
CNT30550344Zea maysOryza brachyantha57.568.5197.52161reverse complement

Expression of CNT3017923

Peptides detected in this lncRNA

>peptide 1 (55 aa)
LYLFHFDFSLFLYPYPLGTAFASIENFFLCMNRYYSNFFPKLPKKNPELDPKLTG*

>peptide 2 (57 aa)
SLFISFRFFPLPLSLSSRYSVCINRELFPLYESILFQFLPETSQEKSRIGSKIDGLM*

Sequence

>CNT3017923
TTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACAGCGTTTGCATCAATAGAGAACTTTTTCCTCTGTATGAATCG
ATATTATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCT
TCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCCTTTCGATGACCTATGTTGTGTT