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Detailed information on CNT3026922


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N725|ALFC3_ORYSJ, E-value = 1e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374131Populus trichocarpaArabidopsis thaliana52.7860.5681.25304forward
CNT3085829Populus trichocarpaVigna radiata33.6852.0186.6194forward
CNT30145818Populus trichocarpaMedicago truncatula31.0817.6484.36179forward

Expression of CNT3026922

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVIIESFVACSKNTLCYCGTLLNIVRTINQDFRLYNGDQAIFLADDGISG*

>peptide 2 (46 aa)
MDGQLRWLIGTNIEHSTPFGETCTSFVVLCAALAKAIKTLSCGLTVC

>peptide 3 (36 aa)
MQQEHALLLRHTSQYRENHQPRFQALQWGPSHFPGR*

Sequence

>CNT3026922
CCGGAACTTTGAAATGACGGGACTTCTTAGTACTTGTAGTCCTTGACGTGGAGGCTCTCTGAGGCACCCTCACCAAGAGTGGCATCACCCTTGTACGTAC
CAAGAGTAGCCTCTGAGTTAGCTTTGCATCTGGCAAGCAATGCAGCACGAGCCTTCCCCACATTCTCCGGCTTGCCAGCCCAGGCCTTGAGGGTACTCTG
CTGAAGAGCACGTCCAAAGGAAAAGGATAGAGACCATGGCTTCTTGAGAGTACCCTCAAGTATGGCATGGTGATCATTGAGAGCTTTGTAGCATGCAGCA
AGAACACGCTCTGTTACTGCGGCACACTTCTCAATATCGTGAGAACCATCAACCAAGATTTCAGGCTCTACAATGGGGACCAAGCCATTTTCCTGGCAGA
TGACGGCATATCTGGCTAAACCATAGGCATTCTCATGGATGGCCAGCTCAGATGGCTCATTGGCACCAATATTGAGCACAGCACGCCATTTGGCGAAACG
TGCACCAGCTTCGTAGTACTTTGCGCAGCGCTGGCCAAGGCCATCAAGACCCTGAGTTGTGGTCTCACCGTTTGTG