Detailed information on CNT30698009


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Quercus lobataCorylus avellana45.6640.1189.44142forward
CNT30373911Quercus lobataArabidopsis thaliana32.834.1187.25102forward
CNT30727740Quercus lobataCorchorus capsularis45.9847.0484.62143reverse complement
CNT30526769Quercus lobataPhaseolus vulgaris25.426.8789.8779reverse complement
CNT3046251Quercus lobataPrunus dulcis47.9149.589.26149reverse complement
CNT30158859Quercus lobataPistacia vera27.6529.9790.786forward
CNT3092489Quercus lobataSolanum tuberosum36.9838.7283.48115reverse complement
CNT30509042Quercus lobataSolanum lycopersicum36.9837.5886.96115reverse complement
CNT3059713Quercus lobataArabidopsis lyrata45.6646.2582.39142reverse complement
CNT30612154Quercus lobataArabis alpina24.442589.4776forward
CNT30652801Quercus lobataRosa chinensis43.7344.4488.24136reverse complement
CNT30714740Quercus lobataMalus domestica golden45.3445.7884.4141reverse complement
CNT30154450Quercus lobataPrunus persica47.9148.8588.59149reverse complement
CNT30706625Quercus lobataPrunus avium43.417.0588.15135reverse complement
CNT3029804Quercus lobataTheobroma cacao47.2747.8885.03147reverse complement
CNT3058191Quercus lobataAmborella trichopoda26.3726.7189.0282reverse complement
CNT3050536Quercus lobataCucumis sativus23.7924.2687.8474reverse complement

Expression of CNT30698009

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRPRAFAQVTWLNPWLGMGRPIVATSHPSS*

Sequence

>CNT30698009
AAAAAAAAAGTGATGGTTCATTTAGGATGAACTCAACGGGTCTTGTTGGGCACAGGTGAGAATCAACCTGTAATCCTTCCACTGCCAAGGGAGGGAGGTA
GTCGCTGCTCTGTGAAACCAGCCTCACGCAGTTCCCTCCACTCTAGAAACCATGAGACCCAGAGCCTTCGCCCAAGTCACATGGCTCAACCCTTGGCTTG
GAATGGGCAGGCCAATTGTAGCCACCTCGCACCCGAGCAGTTGAGTTGAACCACTGTTCAATCACTTTAGTGCCCCTGCACAGGTTACAAGCTCACGCTA
CTGAGCTCGGC