« Back to Solanum lycopersicum search


Detailed information on CNT30509042


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Solanum lycopersicumCorylus avellana28.4324.5887.3687reverse complement
CNT30547369Solanum lycopersicumIpomoea triloba26.811.0485.3782forward
CNT30515285Solanum lycopersicumJuglans regia28.4311.4986.2187forward
CNT30698009Solanum lycopersicumQuercus lobata37.5836.9886.96115reverse complement
CNT30617951Solanum lycopersicumSesamum indicum22.887.491.4370forward
CNT30382680Solanum lycopersicumManihot esculenta36.2736.6382.88111forward
CNT30403379Solanum lycopersicumBeta vulgaris38.8938.6484.03119forward
CNT30632205Solanum lycopersicumVigna unguiculata25.1612.3884.4277forward
CNT3046251Solanum lycopersicumPrunus dulcis42.4843.1986.15130forward
CNT30158859Solanum lycopersicumPistacia vera31.3733.4586.4696reverse complement
CNT3092489Solanum lycopersicumSolanum tuberosum94.7797.6492.76290forward
CNT30566737Solanum lycopersicumActinidia chinensis28.7635.3487.588reverse complement
CNT30591720Solanum lycopersicumMusa acuminata30.0728.8484.7892forward
CNT30612154Solanum lycopersicumArabis alpina24.842585.5376reverse complement
CNT30652801Solanum lycopersicumRosa chinensis25.4925.4989.7478forward
CNT30128358Solanum lycopersicumCorymbia citriodora28.131.1684.8886reverse complement
CNT30716661Solanum lycopersicumMalus domestica golden38.8938.3985.71119forward
CNT30154450Solanum lycopersicumPrunus persica42.4842.6286.15130forward
CNT30410045Solanum lycopersicumPapaver somniferum23.223.9990.1471reverse complement
CNT30706625Solanum lycopersicumPrunus avium24.183.8794.5974forward
CNT30644548Solanum lycopersicumCannabis sativa28.7627.3388.6488forward
CNT3030049Solanum lycopersicumTheobroma cacao27.4527.3685.7184forward
CNT3058191Solanum lycopersicumAmborella trichopoda23.8623.7889.0473forward
CNT3026903Solanum lycopersicumPopulus trichocarpa25.8225.9989.8779forward

Expression of CNT30509042

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MVGFRPILYWTALSKRGVGPCDLGEGLGFMDSRVEGTASGWLHRATITSRSLQWKDYGPVLPKPIKCQMDLSKLDHRF

Sequence

>CNT30509042
GCCGAGTTCAGTAACGTGAACTTATAACCTGAGTGGGGGCTTTAAAGTGATGGAACATTGGATTAGTCCAAATGGTAGGGTTTAGGCCAATATTATATTG
GACCGCCCTCTCCAAGCGAGGAGTTGGCCCATGTGACCTAGGCGAAGGCCTAGGTTTCATGGATTCTAGAGTGGAGGGGACTGCATCAGGCTGGCTTCAC
AGAGCAACGATTACCTCCCGCTCTTTGCAGTGGAAGGATTACGGACCGGTGCTGCCCAAGCCCATCAAATGCCAGATGGACTTGTCTAAATTGGACCATC
GCTTTT