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Detailed information on CNT3092489


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698009Solanum tuberosumQuercus lobata38.7236.9883.48115reverse complement
CNT30499584Solanum tuberosumCoffea canephora25.592584.2176reverse complement
CNT30616204Solanum tuberosumSesamum indicum29.9721.3485.3989forward
CNT30403379Solanum tuberosumBeta vulgaris28.2827.2786.984forward
CNT3045920Solanum tuberosumPrunus dulcis29.6328.7687.588forward
CNT30566737Solanum tuberosumActinidia chinensis30.336.1484.4490reverse complement
CNT30587426Solanum tuberosumMusa acuminata25.9325.0885.7177forward
CNT30509042Solanum tuberosumSolanum lycopersicum97.6494.7792.76290forward
CNT30716661Solanum tuberosumMalus domestica golden32.6631.2985.5797forward
CNT30155101Solanum tuberosumPrunus persica29.6315.8387.588forward
CNT30706625Solanum tuberosumPrunus avium25.593.9790.7976forward

Expression of CNT3092489

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MDPRVEGTASGWLHRATIASYSSQWKDYGSVLPKPIKCQVDLSKIS

Sequence

>CNT3092489
GCCGAGTTCAGTAATGTGAACTTATAACCTGAGTGGGGGCTTTAAAGTGATGGAATATTGGATTAGTCCAAATCGTAGGGTTTAGGCTAGTAGTATACTG
GACTGCCCTCTCCAAGCGAGGAGTTGGTCCATGTGACCTAGGCGAAGGCCTAGATTTCATGGATCCTAGAGTGGAGGGTACTGCGTCAGGTTGGCTTCAC
AGAGCAACGATTGCCTCCTACTCTTCGCAGTGGAAGGATTACGGATCGGTGCTGCCCAAGCCCATCAAATGTCAGGTGGACTTGTCTAAAATTTCAT