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Detailed information on CNT30628532


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 7e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519799Vigna unguiculataSetaria italica21.4814.4888.5187forward
CNT30712551Vigna unguiculataGlycine max54.3257.1490.45220forward
CNT3042438Vigna unguiculataPrunus dulcis29.3814.4686.55119forward
CNT30293493Vigna unguiculataTriticum aestivum20.2512.7987.882forward
CNT30592382Vigna unguiculataMusa acuminata24.216.4783.6798forward
CNT30239005Vigna unguiculataBrassica oleracea21.988.9183.1589forward
CNT30247019Vigna unguiculataAvena sativa27.659.1185.71112forward
CNT30660459Vigna unguiculataTriticum dicoccoides20.2512.6790.2482forward
CNT30310223Vigna unguiculataCamelina sativa24.9415.4284.16101forward
CNT30136463Vigna unguiculataLolium perenne33.0918.2883.58134forward
CNT30721484Vigna unguiculataTriticum spelta41.9823.2683.53170forward
CNT30154895Vigna unguiculataPrunus persica29.3815.7686.55119forward
CNT30331344Vigna unguiculataDioscorea rotundata27.1616.288.18110forward
CNT30113801Vigna unguiculataFicus carica70.8669.4982.58287forward

Expression of CNT30628532

Peptides detected in this lncRNA

>peptide 1 (67 aa)
GGHEGQEEGGHHGAQELGDDVDDTAEEGDVTSDEGAEGDGGVHVTSGDVGADGDGDKKAECVGDAGA*

>peptide 2 (42 aa)
MLAPTETATKRPNAWAMPEPEPANTKMRVEMNSAKAAFNVSG*

Sequence

>CNT30628532
AGGAGGTCACGAAGGCCAGGAGGAGGGAGGCCACCACGGAGCCCAGGAGCTGGGCGATGATGTAGACGACACCGCGGAGGAAGGTGATGTTACCTCCGAC
GAAGGCGCCGAAGGTGACGGCGGGGTTCACGTGACCTCCGGAGATGTTGGCGCCGACGGAGACGGCGACAAAAAGGCCGAATGCGTGGGCGATGCCGGAG
CCTGAGCCGGCGAACACGAAGATGAGGGTGGAGATGAACTCAGCCAAAGCCGCCTTCAACGTGTCGGGGTGAGTGGCCTCCTCGGGCCTTCCGACGGCGA
TGTTTCTGATCGGCATCTTCAATCGACGGTGGTGATGATTACGACTGGTGAAAGATGAAGTGAACACCGAGATCACTCACTCAGATCACTCTCTGTTTCG
CTGCC