« Back to Dioscorea rotundata search


Detailed information on CNT30331344


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 2e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Dioscorea rotundataIpomoea triloba14.8728.0691.09101forward
CNT30514098Dioscorea rotundataJuglans regia14.8725.5185.15101forward
CNT30727221Dioscorea rotundataCorchorus capsularis14.1421.3386.4696forward
CNT30628532Dioscorea rotundataVigna unguiculata16.227.1688.18110forward
CNT30708714Dioscorea rotundataGlycine max16.7925.5691.23114forward
CNT30598709Dioscorea rotundataFraxinus excelsior8.9823.5586.8961forward
CNT30135940Dioscorea rotundataLolium perenne17.2321.9983.76117forward
CNT3066802Dioscorea rotundataLeersia perrieri7.3621.19250forward
CNT30619906Dioscorea rotundataCajanus cajan16.7951.8286.84114forward
CNT30423726Dioscorea rotundataPapaver somniferum20.6210.2782.14140forward
CNT30706772Dioscorea rotundataPrunus avium17.2333.3389.74117forward
CNT30579360Dioscorea rotundataEchinochloa crusgalli17.9720.187.7122forward
CNT30113801Dioscorea rotundataFicus carica18.1129.7891.06123forward
CNT3050798Dioscorea rotundataCucumis sativus11.1922.9684.2176forward

Expression of CNT30331344

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHACTRTYIHIHVNITTTFFSQYSAEGICS*

>peptide 2 (70 aa)
MRMRNEKQLINKTSKSTTNQRTNPINPLIIPRPAHQRRSKAHRRVHRSSDVSSDDETNGYRCYSSQSSSL*

>peptide 3 (46 aa)
LKPYIEYQRSHHNPNNIHNHLNKLKLRPPIHACMHAHVRTSTSTLT*

>peptide 4 (78 aa)
MTISSTRAFQTEMPERPKEPVGSPRMPRRRVMLPPTKAPKVTAGLTWPPEMLAATETATKRPKPCAIDAEISPAGVVEA

Sequence

>CNT30331344
CCTCAAACCATACATAGAATACCAAAGATCTCACCACAACCCAAACAACATACATAACCACTTAAACAAACTCAAACTACGTCCACCCATCCACGCATGC
ATGCATGCACACGTACGTACATCCACATCCACGTTAACATAACCACCACCTTTTTCTCTCAATATTCAGCGGAAGGAATTTGCTCATGAGAATGAGAAAT
GAAAAACAACTCATAAACAAGACCAGCAAGTCCACCACCAATCAAAGGACCAACCCAATAAACCCACTGATTATCCCAAGACCAGCTCACCAGCGACGGT
CCAAAGCTCACCGCCGGGTTCATCGAAGCTCCGATGTTAGCTCCGACGATGAAACCAATGGCTATAGGTGCTATAGTTCCCAAAGTTCCTCTCTTTGAAT
CAATGGCTGTGGCGTAGACGGTGTAGACAAGGCCAAACGTCATGACGATCTCCAGCACGAGAGCGTTCCAGACGGAGATGCCGGAGAGGCCGAAGGAGCC
GGTGGGTTCGCCGAGGATGCCGCGGAGAAGGGTTATGTTGCCGCCGACGAAGGCGCCGAAGGTTACTGCTGGGTTGACGTGGCCGCCGGAGATGTTGGCG
GCGACGGAGACGGCGACGAAAAGGCCGAAGCCGTGTGCTATTGATGCTGAGATTAGCCCCGCCGGTGTTGTGGAGGCGC