Detailed information on CNT30247019


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 3e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678075Avena sativaSetaria viridis15.9538.2185.71196forward
CNT30549654Avena sativaIpomoea triloba10.253587.3126forward
CNT30628532Avena sativaVigna unguiculata9.1127.6585.71112forward
CNT30708714Avena sativaGlycine max10.0127.5888.62123forward
CNT30223457Avena sativaHordeum vulgare11.6447.9993.71143forward
CNT30592382Avena sativaMusa acuminata22.0545.5584.87271forward
CNT3084535Avena sativaVigna radiata7.7321.7985.2695forward
CNT30552975Avena sativaOryza glaberrima13.8329.3190170forward
CNT30137220Avena sativaLolium perenne26.8522.4890.61330forward
CNT30229576Avena sativaAnanas comosus15.8727.3984.62195forward
CNT30623609Avena sativaDaucus carota10.5823.1382.31130forward
CNT30361046Avena sativaSorghum bicolor11.6422.9591.61143forward
CNT30619906Avena sativaCajanus cajan10.2557.2793.65126forward
CNT30579360Avena sativaEchinochloa crusgalli17.9836.4190.95221forward
CNT30176366Avena sativaVigna angularis10.0125.6885.37123forward
CNT30113856Avena sativaFicus carica17.2521.1286.79212forward

Expression of CNT30247019

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVCLSEWIRTEATADSLSCLIGGKDSPRNLKKG*

>peptide 2 (35 aa)
MELEEEAAAAVDRSFTPRTEPTLSSRWWGAARGCG*

>peptide 3 (68 aa)
MLPPRKAPKVTAGFTCPPEMLAPTDTATNRAKACAMAAEIRPTGASTPPLSLAAGTRTVVVRYGMNLQ*

>peptide 4 (69 aa)
MYCIIFFCYLWAGASTWCVCQSGSEQKLLLIHSHASSVGRIPHVISKKGKPVICSNHFHLKRPYDTTTF*

>peptide 5 (80 aa)
MLAPTMKPMAMGAMVPSSPFLGSTAVAYTVYTRPKVITISSTSASHADTPDRAKNPVGSPPVENLRRKQAAVEPSSWATQ*

Sequence

>CNT30247019
GGGTCCAAGTTCACGGTTTACATCTCAAGATCATGACACTCACTGACTGACCGACCGAAGGATTCAAAGCAAATTAACGAGGAGACCGAGGAACTAAAAC
GAACGATTCATGGAACTGGAAGAAGAAGCAGCGGCAGCGGTCGATCGATCTTTCACACCACGTACGGAACCGACGCTTAGTAGTCGGTGGTGGGGAGCTG
CTCGTGGCTGCGGTTGATGAAGAGCAGCTCGTAGACGACGCCGGCGAGGATGTTGGCGCCAACGATGAAGCCGATGGCGATGGGCGCGATGGTGCCCAGC
TCGCCCTTCTTGGGGTCAACCGCCGTGGCGTACACGGTGTACACCAGGCCGAAGGTCATCACGATCTCCAGCACCAGCGCCTCCCACGCCGACACGCCCG
ACAGGGCGAAGAACCCCGTGGGGAGCCCGCCGGTGGAGAACTTGAGGAGGAAGCAGGCGGCGGTGGAGCCCAGCAGCTGGGCCACCCAGTAGAGGAGGCC
CCGGAAGAGGGTGATGTTGCCGCCCAGGAAGGCGCCGAAGGTCACGGCGGGGTTCACGTGCCCGCCGGAGATGTTGGCGCCCACGGACACCGCCACGAAC
AGGGCGAAGGCGTGCGCGATGGCCGCGGAGATCAGGCCCACTGGGGCATCCACACCGCCGCTCAGCTTGGCTGCAGGCACACGTACAGTCGTCGTCAGAT
ACGGAATGAATCTTCAGTGAAGCAAATATTAAGTGCTACTATTTGATTCCTATTCAGTTTCCCGATTCATCGATCTCTACTTTTTTAAGAAATTGTGCTG
TTAATTCAGGCGCAAATGTACTGTATCATTTTTTTTTGCTACTTGTGGGCAGGAGCTAGCACATGGTGTGTCTGTCAGAGTGGATCAGAACAGAAGCTAC
TGCTGATTCACTCTCATGCCTCATCGGTGGGAAGGATTCCCCACGTAATCTCAAAAAAGGGTAAACCGGTAATTTGCAGCAATCATTTTCACCTAAAAAG
GCCGTATGACACCACCACTTTCTGACTTTCTGAAACAAAATTTCTCTAAGCTTCTGGCAACACCTTCTAAAGCATGATGGAAAGGGATTTTTTCTCCAAA
AGCAAGCGATGATTTTCTCCTCTCTTGTTGTGTACGTACCGCGATGCAAATTAGTGAACTTTCTCCTAATCTAATCTACTGTACCACATGTGTGCGAGTG
GAGGTCGTGCGTGGAATGAATGATTAACG