« Back to Musa acuminata search


Detailed information on CNT30592382


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 4e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678075Musa acuminataSetaria viridis32.7738.0187.18195forward
CNT30628532Musa acuminataVigna unguiculata16.4724.283.6798forward
CNT30708714Musa acuminataGlycine max27.0636.183.23161forward
CNT3042438Musa acuminataPrunus dulcis20.6714.9584.55123forward
CNT30223457Musa acuminataHordeum vulgare26.7253.3688.68159forward
CNT30568703Musa acuminataActinidia chinensis28.410.280.47169forward
CNT30552975Musa acuminataOryza glaberrima28.5729.3191.18170forward
CNT30247019Musa acuminataAvena sativa45.5522.0584.87271forward
CNT30137220Musa acuminataLolium perenne49.0819.8986.64292forward
CNT30361046Musa acuminataSorghum bicolor21.0120.0690.4125forward
CNT30619906Musa acuminataCajanus cajan16.4744.5590.8298forward
CNT30706772Musa acuminataPrunus avium20.6735.0484.55123forward
CNT3057342Musa acuminataAmborella trichopoda26.0522.2182.58155forward
CNT30575580Musa acuminataOryza barthii15.2927.1693.4191forward
CNT30579360Musa acuminataEchinochloa crusgalli33.1132.4590.86197forward
CNT30176366Musa acuminataVigna angularis16.4720.4685.7198forward
CNT30113801Musa acuminataFicus carica31.645.5284.04188forward
CNT3050798Musa acuminataCucumis sativus15.9728.783.1695forward

Expression of CNT30592382

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MSGPSQYTHWWVHDQLTRAGPKVMTISSTSASHTLTPVSPKVPVSSPPVEKRSRRQATVEPSSWAIQ*

>peptide 2 (63 aa)
LHEREHHLGSRTQTKEERKLRINNTLMKAKSKDFLERGGDDHDVQGPKRHLSNRRWGAARGSG*

>peptide 3 (52 aa)
FTRKRTPSWITDSNERGAEIKDKQHVDESKEQGLFGTWRRRPRRAGPETPPQ*

>peptide 4 (50 aa)
MPRSSVMLPPTKAPKVTAGFTCPPEMLAPTDTATNRAKPCASAAAISPSGV

Sequence

>CNT30592382
TTTACACGAAAGAGAACACCATCTTGGATCACGGACTCAAACGAAAGAGGAGCGGAAATTAAGGATAAACAACACGTTGATGAAAGCAAAGAGCAAGGAC
TTTTTGGAACGTGGAGGAGACGACCACGACGTGCAGGGCCCGAAACGCCACCTCAGTAATCGGCGGTGGGGAGCTGCTCGTGGGAGTGGCTGATGAAGAA
GATCTCGTAGACGATACCGGCAAGAGCGCCGCCGATGAGTGGTCCGAGCCAGTACACCCACTGGTGGGTCCACGACCAGCTGACGAGAGCCGGGCCGAAG
GTCATGACGATCTCCAGCACGAGCGCCTCCCACACGCTCACCCCGGTCAGCCCGAAGGTGCCGGTCTCGAGCCCGCCGGTGGAGAAGCGGAGCAGGAGGC
AGGCCACGGTGGAGCCCAGCAGCTGGGCGATCCAGTAGAGGATGCCTCGTAGCAGCGTGATGTTGCCGCCCACGAAGGCGCCGAAGGTCACGGCCGGGTT
CACGTGCCCACCCGAGATGTTAGCTCCCACGGACACCGCCACAAACAGGGCGAAGCCGTGCGCCAGCGCCGCCGCGATCAGCCCCTCGGGCGTCG