« Back to Setaria italica search


Detailed information on CNT30519799


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84RL6|TIP23_MAIZE, E-value = 7e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Setaria italicaOryza sativa13.1439.591.1479forward
CNT30671329Setaria italicaSetaria viridis26.9639.4298.15162forward
CNT30549654Setaria italicaIpomoea triloba13.9823.3389.2984forward
CNT30628532Setaria italicaVigna unguiculata14.4821.4888.5187forward
CNT30712551Setaria italicaGlycine max13.9821.8291.6784forward
CNT30223054Setaria italicaHordeum vulgare18.1420.7288.07109forward
CNT30552658Setaria italicaOryza glaberrima30.2827.0493.96182forward
CNT30627409Setaria italicaDaucus carota20.319.4383.61122forward
CNT30364446Setaria italicaSorghum bicolor15.3137.197.8392forward
CNT30595700Setaria italicaOryza meridionalis16.6446.7388100forward
CNT30706772Setaria italicaPrunus avium13.9823.9390.4884forward
CNT30644098Setaria italicaCannabis sativa17.4737.587.62105forward
CNT30113801Setaria italicaFicus carica13.8120.189.1683forward
CNT3063260Setaria italicaSelaginella moellendorffii17.6428.2783.02106forward

Expression of CNT30519799

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MEPPLKGPAARMLAPTMKPMAMGAMVPREPFLGPKVTAGLR*

>peptide 2 (33 aa)
MLAATETPTKRANAWAIAIATRPEASSAPPWLSC

>peptide 3 (30 aa)
MRSLHRFNKKKRREMNTRTMNGTSFVNTNS*

Sequence

>CNT30519799
TAAACGAAATTTAAAAAGTAAAACACACTTTTTTTTCCTTGAAAGACGAGAACCGCAGATCGGATGAGATCTTTACATCGATTTAACAAAAAAAAAAGGA
GGGAAATGAACACAAGAACCATGAATGGCACATCATTTGTAAATACAAATTCGTGACCATGTCACGTGTCGAAGAGCAAAGCAAACGACGACGAAGATTG
AAACGCTGCACTCGATCGATCGGTTCAATCCATCGGACTTAGGCGTAGTCCTGGTCGGCGACCTGCTGGTAGCCACCGCCGATGAGCGGGCCGACCCAGT
AGACCCAGTTGCCGGCGAAGTTGCCGGCGGCGACGGCGGGGCCGAAGGAGCGGGCGGGGTTCATGGAGCCGCCGCTGAAGGGGCCGGCGGCAAGGATGTT
GGCACCGACGATGAAGCCGATGGCGATGGGGGCGATGGTGCCGAGGGAGCCCTTCTTGGGGCCGAAGGTCACGGCGGGGTTGAGGTGACCGCCGGAGATG
TTGGCGGCGACGGAGACGCCGACGAAGAGGGCCAATGCGTGGGCGATCGCGATCGCCACCAGGCCGGAAGCATCGAGCGCGCCGCCATGGCTCAGTTGCC
C