Detailed information on CNT30293493


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689996Triticum aestivumOryza sativa16.6932.0492.52107forward
CNT30549654Triticum aestivumIpomoea triloba14.042588.8990forward
CNT30628532Triticum aestivumVigna unguiculata12.7920.2587.882forward
CNT30708714Triticum aestivumGlycine max14.0420.1891.1190forward
CNT30389818Triticum aestivumTriticum turgidum83.7886.0695.72537forward
CNT30619906Triticum aestivumCajanus cajan14.0440.9194.4490forward
CNT30113801Triticum aestivumFicus carica14.0421.7987.7890forward

Expression of CNT30293493

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MAAPTASPPAGHDGAEQLRHPVHHRLEQADVAAHEGAECDGRVHVPARDVGAHGHGHEERERVRQRRRDQPRRRRRAAVSQLAC

>peptide 2 (54 aa)
MLPPTKAPNVTAGFTCPPEMLAPTDTATKSANACASAAAISPAGVVAPPSVSLPA

>peptide 3 (57 aa)
MRLRVRFSVVGGGELLVGPLADEADVVDEGGDGGAHGLAAGRPRRSRAAAPPSTPPP*

>peptide 4 (32 aa)
MKLNWLTDDDTTTYTCWNFLNRFQSLMAVMDG*

>peptide 5 (47 aa)
RKYGHKIGKTSSCQDRQYLCTNINLDHGIEAFIIEDIHQDKRLFLTD*

Sequence

>CNT30293493
AGAAAATATGGACACAAGATTGGCAAGACATCAAGTTGCCAGGACAGACAATACCTTTGTACAAACATCAATCTTGACCATGGAATAGAAGCATTCATAA
TTGAGGACATACACCAAGACAAGAGATTATTCCTGACTGACTGACTCACACTGTTTACCCTGAATTTCTCAAAGACACGTGAGAGAGAGGGAGAGAGAAT
GAAACTAAACTGGCTTACTGATGATGACACGACGACGTACACTTGCTGGAATTTTTTGAATCGATTTCAATCTCTCATGGCGGTGATGGATGGATGAGAT
TGAGAGTGAGGTTTTCAGTAGTCGGCGGTGGGGAGCTGCTCGTGGGGCCGCTGGCCGATGAAGCAGATGTCGTAGACGAGGGCGGCGATGGCGGCGCCCA
CGGCCTCGCCGCCGGCAGGCCACGACGGAGCCGAGCAGCTGCGCCACCCAGTACACCACCGCCTTGAGCAGGCTGATGTTGCCGCCCACGAAGGCGCCGA
ATGTGACGGCCGGGTTCACGTGCCCGCCCGAGATGTTGGCGCCCACGGACACGGCCACGAAGAGCGCGAACGCGTGCGCCAGCGCCGCCGCGATCAGCCC
CGCCGGCGTCGTCGCGCCGCCGTCAGTCAGCTTGCCTGCCA