Detailed information on CNT30310223


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 1e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678050Camelina sativaSetaria viridis9.1623.8186.6760forward
CNT30698180Camelina sativaQuercus lobata17.2532.9483.19113forward
CNT30618331Camelina sativaSesamum indicum22.2917.3481.51146forward
CNT30382128Camelina sativaManihot esculenta2033.5990.08131forward
CNT30628532Camelina sativaVigna unguiculata15.4224.9484.16101forward
CNT30393023Camelina sativaTriticum turgidum17.2525.8682.3113forward
CNT30146490Camelina sativaMedicago truncatula2036.3987.79131forward
CNT30260230Camelina sativaBrassica rapa9.4721.7587.162forward
CNT30420453Camelina sativaPapaver somniferum25.0418.3787.2164forward
CNT30706772Camelina sativaPrunus avium16.9531.6286.49111forward
CNT3057335Camelina sativaAmborella trichopoda17.2532.4784.07113forward
CNT30113801Camelina sativaFicus carica17.2527.3686.73113forward
CNT3050792Camelina sativaCucumis sativus23.2115.2384.87152forward

Expression of CNT30310223

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MEAPENAPPAKMLAPTMKPIAMGAIVPRLPFLGSMAVA*

>peptide 2 (33 aa)
MLPPTKAPKVTAGLTCPPEMLAPTETATKSPKA*

Sequence

>CNT30310223
CTGCAACACTTGAAAACTTAAGATGAGATATAGACACATAATTCACATTATAGTAGTTGCATTTACCACTCTTGAAATCAACGGACAAGGATTCATCTAG
AAGATCATCCAACGGTCATAAACCCCTTGATGGTTCGAAATTACACAAACGGAATAAAAAAAGCAAAAACATTAAAATTCAAAGACGAATAAAATTACAC
AAGAGAGAAAAAGAGAGACTAATTCAGTAGTCGGTGGTTGGGAGCTGCTCGTGGGTGGTGTTGATGAAGAAAACCTCGTAGATGAGTCCGGCCCAGTAGA
CCCAGTGGTTGGTCCACGTCCAGCTCACCACCGCTGGTCCGAAAGCCACGGCGGGATTCATGGAGGCTCCGGAGAATGCTCCTCCAGCTAAGATGTTGGC
TCCAACGATGAAACCAATTGCGATGGGAGCGATTGTTCCAAGACTCCCGTTTTTGGGGTCAATGGCGGTGGCGTAGACGGTGATGAGACAAGCGACGACT
GAGCCGAGGAGCTGAGCGATCCAGTAAAGGATACCACGGAGGAGAGTGATGTTACCACCAACGAAAGCACCGAAAGTGACGGCAGGGTTAACGTGTCCAC
CGGAGATGTTGGCACCAACAGAGACTGCTACAAAAAGTCCAAAGGCATGAGCCAG