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Detailed information on CNT30721484


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41975|TIP22_ARATH, E-value = 6e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677491Triticum speltaSetaria viridis10.8122.8396.279forward
CNT30522256Triticum speltaSetaria italica18.3328.6388.06134forward
CNT30549654Triticum speltaIpomoea triloba15.8732.2287.93116forward
CNT30628532Triticum speltaVigna unguiculata23.2641.9883.53170forward
CNT30708714Triticum speltaGlycine max13.5422.290.9199forward
CNT30296934Triticum speltaTriticum aestivum50.7568.96100371forward
CNT30223741Triticum speltaHordeum vulgare16.6931.2899.18122forward
CNT30393023Triticum speltaTriticum turgidum29.2748.97100214forward
CNT30242094Triticum speltaAvena sativa10.8121.4794.9479forward
CNT30662885Triticum speltaTriticum dicoccoides20.7966.6798.68152forward
CNT30135940Triticum speltaLolium perenne15.8721.898.28116forward
CNT3066802Triticum speltaLeersia perrieri8.762792.1964forward
CNT30361046Triticum speltaSorghum bicolor18.1921.3590.23133forward
CNT30619906Triticum speltaCajanus cajan15.8752.7393.1116forward
CNT30706772Triticum speltaPrunus avium11.0823.0888.8981forward
CNT30322744Triticum speltaAsparagus officinalis9.7121.0194.3771forward
CNT30575580Triticum speltaOryza barthii10.6723.2896.1578forward
CNT30579749Triticum speltaEchinochloa crusgalli18.622.1987.5136forward
CNT30113801Triticum speltaFicus carica15.3227.1288.39112forward

Expression of CNT30721484

SRR9114152: 0.0 RPKM

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MTPARPRKRVMLPPTKAPKVTAGFTCPPEMLAPTDTATNRAKAMPEPWPAKTKMSVEMNSASAALRAPTSYTSRWLPTAILLTGIFAHLQASLAF*

>peptide 2 (62 aa)
TRHGRSIPTQLNLKLLGRANSQFYRSKLTGSVIPDRDHPRFYSSTHAPQTDSTDRPIDGSQD*

>peptide 3 (53 aa)
MHHGMRRPREKLKRLMTGRKGETKHHTDGWTATPILSSLLSSRWWGAARGCGR*

>peptide 4 (50 aa)
HKARSIHSNSTELEITRAGEFTVLQKQIDWVGHPRSRSSTLLQLHARTTN*

Sequence

>CNT30721484
TCACAAGGCACGGTCGATCCATTCCAACTCAACTGAACTTGAAATTACTCGGGCGGGCGAATTCACAGTTTTACAGAAGCAAATTGACTGGGTCGGTCAT
CCCAGATCGAGATCATCCACGCTTTTACAGCTCCACGCACGCACCACAAACTGACTCGACTGACCGACCGATCGACGGATCCCAGGACTGATTGATTCAA
AGCAAACGAGGCGAGCTCCGCATACATGCATCATGGCATGCGGCGACCGCGCGAGAAACTAAAACGACTGATGACGGGAAGGAAGGGGGAGACGAAGCAT
CACACGGACGGATGGACGGCGACTCCGATCCTAAGCTCGCTGCTTAGTAGTCGGTGGTGGGGAGCTGCTCGTGGGTGCGGGAGATGAAGAGCAGCTCGTA
GATGACGCCGGCGAGGCCGCGGAAGAGGGTGATGTTGCCGCCCACGAAGGCGCCGAAGGTCACGGCCGGGTTCACGTGCCCGCCGGAGATGTTGGCGCCC
ACGGACACCGCCACGAACAGGGCGAAGGCCATGCCGGAGCCCTGGCCGGCGAAGACGAAGATGAGCGTGGAGATGAACTCGGCGAGCGCCGCCTTGAGGG
CGCCGACCTCGTACACCTCACGGTGGCTCCCCACGGCGATCCTGCTGACCGGCATTTTCGCTCACCTCCAAGCCTCGCTAGCTTTCTAGAGAAGAAGAGA
CTGGCCGGAGTCGAGAGAGATGAGAGAGGTG