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Detailed information on CNT30583132


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30611432Echinochloa crusgalliArabis alpina22.3516.3181.17154forward

Expression of CNT30583132

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MASMASLPFLISLSLSSFISFSVLPNPSGLKSGPPG*

>peptide 2 (45 aa)
MNTIMHDATRLKPTVHQPAASMHMIEQRHIIIMYVSLPLHSNIMQ*

Sequence

>CNT30583132
TGTCTCAATTAACAGGATCGATTACTAATTTGTTACAAGCAGCTAGCGTGCAGGCCGGCCAGCGATATATATGAATACAATCATGCATGATGCAACACGC
CTCAAACCCACTGTCCATCAGCCAGCAGCCAGCATGCATATGATCGAACAACGACACATCATCATCATGTACGTCTCGCTCCCACTACACAGCAATATAA
TGCAATAATCCTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTGACTGGGTCTGCCAGGTGGTCTAGCAGGTTCTGGAACGGGCCGACGCCGGTG
ACGAGGCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCCGTCTTGC
CGAACCCTAGCGGGTTGAAGAGCGGGCCGCCGGGGTAGGACGGGTCGCCGGAGCCGCCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGA
CCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTCGTAG
GCCAGCCACTTGGGCTCGATGAAGCCGCCGGTGCCCTCGGGGTCGGACAGGCCAAGCGGGTCGAAACCGAAGTCGCCGGGAAGCCTGCC