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Detailed information on CNT30350311


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 7e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30441655Eragrostis tefAegilops tauschii54.4188.2784.68444forward
CNT30611432Eragrostis tefArabis alpina42.7736.9777.94349forward

Expression of CNT30350311

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQCLKRFTIINQRARIHTHLVAQLHRQAAASNATG*

>peptide 2 (41 aa)
MKYPRMASMASLPFLISLSLSSLSDFSSLPNPSGLKIGPPG*

>peptide 3 (33 aa)
MNRDAVPQTLHHHQPTRTNPHTSRRSIAPTGSS*

Sequence

>CNT30350311
TACCGCTTCATGTGAAACTGCCTGGATAAACCCTGGCAAACTAAAGGTTATATGATACTGTACCTAGCTAGGTTTGATAACACGAAGTAATTGTTGGCAA
TGTTGAGGTAGTATCACGGTAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGACGATCAATTGCTATTTTGTTACAA
GCAGCAGGCTGGCGATGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAACCAACGCGCACGAATCCACACACATCTCGTCGCTCAATTG
CACCGACAGGCAGCAGCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTAAAGCGCAATCTTTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTG
ACGGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGTAGGGTCCTTCGCCGGTGACAAGGCCCTGGATGAAGTACCCCAGGATGGCGAGCATGGCGAGCCTGC
CGTTCTTGATCTCCTTGAGCTTGAGCTCCTTGAGCGACTTCTCGTCCTTGCCGAATCCGAGCGGGTTGAAGATCGGGCCGCCGGGGTAGGCCGGGAAGTA
CTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGCAGCCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATCTCGAAGACGAAGAGCGTGTAGGGGTCG
GCCCAGTAGTTGTAGGTGCCGGCGGGCGGGATGACGCCCGTCTTGAACCACGGCAGCGCTGTCTCCGCCGGGATCAGGCCCAGCTTGCCGAACACCTCCG
GGGCGATGGAGCCCGC