« Back to Oryza meridionalis search


Detailed information on CNT30595805


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671227Oryza meridionalisSetaria viridis16.8228.2498.6172forward
CNT30521379Oryza meridionalisSetaria italica39.7227.0784.71170forward
CNT30630340Oryza meridionalisVigna unguiculata41.5938.6184.27178forward
CNT30708734Oryza meridionalisGlycine max39.9530.2192.98171forward
CNT30304884Oryza meridionalisTriticum aestivum30.3728.286.92130forward
CNT3074265Oryza meridionalisBrassica juncea21.0313.6688.8990forward
CNT30474933Oryza meridionalisSaccharum spontaneum40.6527.5886.78174forward
CNT3011199Oryza meridionalisZea mays40.6529.1586.21174forward
CNT30368761Oryza meridionalisSorghum bicolor40.659.4386.78174forward
CNT30619918Oryza meridionalisCajanus cajan41.367.9486.44177forward
CNT30573272Oryza meridionalisVitis vinifera41.1224.2882.95176forward
CNT3055889Oryza meridionalisAmborella trichopoda34.8120.7280.54149forward
CNT30102311Oryza meridionalisOryza rufipogon40.6526.0189.08174forward
CNT30576889Oryza meridionalisOryza barthii40.6526.5688.51174forward
CNT30725237Oryza meridionalisLupinus angustifolius21.0316.9886.6790forward
CNT3039930Oryza meridionalisMarchantia polymorpha31.7819.6880.88136forward

Expression of CNT30595805

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MKQQQQWVDEIRSCRCPRPRTGCSRRGRRRRRRGRCPPPRSTPSCASSRGCGTAASSRRCTAPRTARCPASAPPARTPARPP*

>peptide 2 (80 aa)
MRSDLVDVLVLELDVVVVGGGVADEDDVPRRDPHLLVHLPADVAQPLRPVDALRLAPPVAQHPRHLRVLLPVLLEHQLPLL

>peptide 3 (54 aa)
MSPAAIHTFLCIFPRMWHSRFVPSMHCASHRPLPSIRATCAYSCPSSLNTSSRFS

>peptide 4 (52 aa)
NNCPRNLFHIYRSLSGRRPHTSYYRDYNITPHITVVASNKKQFLDCFFVPLD*

>peptide 5 (34 aa)
IIAPEISSIYTGLSQADDLTHHTTVIIISHHTSQ*

Sequence

>CNT30595805
GAATAATTGCCCCCGAAATCTCTTCCATATATACAGGTCTCTCTCAGGCAGACGACCTCACACATCATACTACCGTGATTATAATATCACACCACACATC
ACAGTAGTAGCAAGTAATAAGAAGCAATTCTTGGATTGTTTCTTTGTACCATTGGACTGATGAAGCAGCAGCAGCAGTGGGTAGATGAGATCAGATCTTG
TCGATGTCCTCGTCCTCGAACTGGATGTAGTCGTCGTGGGCGGCGGCGTCGCCGACGAGGACGATGTCCCCCGCCGCGATCCACACCTTCTTGTGCATCT
TCCCGCGGATGTGGCACAGCCGCTTCGTCCCGTCGATGCACTGCGCCTCGCACCGCCCGTTGCCCAGCATCCGCGCCACCTGCGCGTACTCCTGCCCGTC
CTCCTTGAACACCAGCTCCCGCTTCTCG