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Detailed information on CNT30474933


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 4e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673634Saccharum spontaneumSetaria viridis25.274.396.86159forward
CNT30631858Saccharum spontaneumVigna unguiculata24.5634.690.97155forward
CNT30304884Saccharum spontaneumTriticum aestivum30.942.395.38195forward
CNT3074265Saccharum spontaneumBrassica juncea33.1231.7182.78209forward
CNT3011199Saccharum spontaneumZea mays60.764.1597.91383forward
CNT30718760Saccharum spontaneumMalus domestica golden17.5930.1683.78111forward
CNT30619918Saccharum spontaneumCajanus cajan36.6110.3688.31231forward
CNT30595805Saccharum spontaneumOryza meridionalis27.5840.6586.78174forward
CNT30573246Saccharum spontaneumVitis vinifera35.9731.3188.11227forward

Expression of CNT30474933

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSPAAIQTFLCILPRMWQRRRVPSTQMASHRPLPSIRVTCAYSCPSSLKTSSRLSS

>peptide 2 (59 aa)
MYQIKNEIIRDYLTTPIQLQDHAGRIANPQQPAKPKPYHHILEQKSHNNKVARKEKQIS*

Sequence

>CNT30474933
CTAATTGGCAAATCAATCAATATAAGAGAACACAATCCAGAACAATAATAACTTAGTATAGAACATCTTGTGACAGCATGTACCAGATTAAAAACGAAAT
TATCCGCGATTATTTAACCACCCCAATCCAATTACAAGATCACGCAGGCAGGATTGCGAATCCACAACAGCCAGCCAAGCCTAAACCATACCACCACATA
CTAGAACAGAAATCACACAATAATAAAGTAGCCCGCAAGGAGAAACAGATTTCTTAGATCTTGTCGATGTCCTCGTCCTCGAACTGGATGTAGTCGCTGC
CCTCCTCGCCGTCCTCGGGCCCATCGACGTCGACGCCCTCGTTGAGCCTGAGCGTCTCGGGGAGCTCCCCGTAGGCCTTGAGCAGGCGCGCCTCGTCGTT
CATGTACTTGAGGATGACGTCGGCCTTGTCGTCCTGGTAGTCGCGGAGGCCGACGAGGACGATGTCCCCGGCCGCGATCCAGACCTTCTTGTGCATCTTG
CCCCGGATGTGGCAGAGGCGGCGCGTGCCATCGACGCAGATGGCCTCGCACCGCCCGTTGCCGAGCATCCGGGTCACCTGCGCGTACTCCTGCCCGTCTT
CCTTGAAGACGAGCTCGCGCTTGTCGTCGTC