Detailed information on CNT3039930


BLAST search results

BLAST vs Swiss-Prot:
sp|P56331|IF1A_ONOVI, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616469Marchantia polymorphaSesamum indicum30.128.1179.33208forward
CNT30630340Marchantia polymorphaVigna unguiculata24.0236.0179.52166forward
CNT30708734Marchantia polymorphaGlycine max34.0141.5278.3235forward
CNT30718760Marchantia polymorphaMalus domestica golden29.0954.6280.1201forward
CNT30595805Marchantia polymorphaOryza meridionalis19.6831.7880.88136forward
CNT30573246Marchantia polymorphaVitis vinifera35.0233.3878.51242forward

Expression of CNT3039930

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MWQTFQLSAYIPYKHRKSPSKYCAEVHSAFGQRDPMCETSISCRYPRPRTRCSHRPRHPRRRPYHRQYPR*

>peptide 2 (30 aa)
MQRASQRPFPNIRRTCAYSCPSSLKTSSRF*

>peptide 3 (79 aa)
MTQPLGTVYAESFTTPVSQHTQDLRVLLSIFLKNQLSLLKSLNTYNKHRHTAATRRNSPEKTTDIPPQDVNRPPPSSSRA

Sequence

>CNT3039930
GCGTGCTTATGTCAAGATCACTGCAGCCTCCACACCAAGAATCAGGGGGCTCGCTGCTAATAAGTAGCGCTTGATGTGGCAGACATTTCAGCTGAGCGCG
TACATACCATATAAACACAGGAAATCTCCGTCCAAGTATTGTGCAGAGGTTCACTCGGCTTTTGGACAGCGAGATCCGATGTGTGAGACGTCTATATCCT
GTCGATATCCTCGTCCTCGAACTCGATGTAGTCATCGCCCTCGCCATCCTCGTCGTCGTCCATACCACCGGCAATACCCTCGTTGAGACGGACGTTGTCA
GGCAGCTCACCATAAGCCTTCAATAACCTAGCCTCGTCGGGTTGGTACTTAAGAATAACATCAGCCTTATCGTCTTGGTAGTCTCGTAGACCGACCAAAA
TGATATCACCGGAAGCAATCCAAACTTTTTTGTGCATCTTTCCTCGGATATGACACAACCGCTTGGTACCGTCTATGCAGAGAGCTTCACAACGCCCGTT
TCCCAACATACGCAGGACCTGCGCGTACTCCTGTCCATCTTCCTTAAAAACCAGCTCTCGCTTCTAAAAAGCTTGAACACTTACAATAAGCACAGACACA
CCGCTGCGACGCGACGCAATTCTCCCGAGAAAACGACCGATATACCACCGCAGGACGTCAACCGACCACCACCGTCGAGCTCACGAGCGGG