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Detailed information on CNT30368761


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 2e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673634Sorghum bicolorSetaria viridis8.6274.395.6159forward
CNT30521379Sorghum bicolorSetaria italica24.1270.8696.63445forward
CNT30616469Sorghum bicolorSesamum indicum14.6336.4982.59270forward
CNT30631858Sorghum bicolorVigna unguiculata8.434.692.26155forward
CNT30708734Sorghum bicolorGlycine max16.265388300forward
CNT30304884Sorghum bicolorTriticum aestivum10.244195.24189forward
CNT3074265Sorghum bicolorBrassica juncea14.6340.9784.81270forward
CNT30475502Sorghum bicolorSaccharum spontaneum33.289797.23614forward
CNT3011199Sorghum bicolorZea mays20.663.6597.37380forward
CNT30718760Sorghum bicolorMalus domestica golden6.0230.1684.68111forward
CNT30595805Sorghum bicolorOryza meridionalis9.4340.6586.78174forward
CNT30573246Sorghum bicolorVitis vinifera17.0743.4588.25315forward
CNT3055889Sorghum bicolorAmborella trichopoda11.4929.4980.66212forward
CNT30102311Sorghum bicolorOryza rufipogon16.2144.6993.31299forward
CNT30576889Sorghum bicolorOryza barthii14.9642.1492.39276forward

Expression of CNT30368761

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MSPAAIQTFLCILPRMWQRRRVPSTQMASHRPLPSIRVTCAYSCPSSLKTSSRLSSSASFFPLFRFLPPLPLFFGIFAEEGESGGGGGGGGETKP*

>peptide 2 (37 aa)
MKHQTEQKNIRQTEERKQIFLLPIEILFLQLSLRLLM*

>peptide 3 (30 aa)
MNRLTQAGITPQTAAPRSPLQTVYHKKEGK*

>peptide 4 (33 aa)
MGVTASSQINKNHRMQANEHPSRLVRTQAHTHR*

>peptide 5 (55 aa)
MYQIKNEIIRDYLTTSILLQDHSGRIVIHAGRIANPQQPAQPKPYHHILEHKVTQ*

Sequence

>CNT30368761
AGCGCCTATACAAGTGGAAAAGAAGAGACAAACCAGTGAATTCATGGGCTGTTGAGAGTATTGGTCCAAACAACATCTGAAGAGGAAGCCTAAGGTCTAG
ACTACAGCATCAGGGAATGAAGCATCAAACAGAACAGAAAAATATAAGACAAACAGAGGAAAGGAAGCAAATCTTCCTCCTCCCCATCGAGATCCTCTTC
CTCCAATTATCCCTGCGATTGCTCATGTAGTCAGTTATTTATTACAAGTCCCGTAATCAGGTTGATCTCACCAGTGGCCATGGGTGTGACAGCCAGCTCA
CAGATAAACAAGAATCACAGAATGCAGGCAAATGAGCACCCTAGTAGACTGGTGAGAACACAAGCACACACACACAGATAAATGTGTGTAAACATGTTGA
ACCATTCATCACCTAATAGACCTTAAACCCCTTGAAATTTCATACCTGTGAGAGGAGGTGGTGCTGCTGCCAATGGAGAACTTGAGGGGGAGCTCATAAC
CAGGCAGATTATAGCATAGCCAGTCCAACGCCAAGTCAGACGTCACTGAATCCTACCTCATAAAAAACAAAGACAAACAAAAGGGCACAAGAACAAGCAC
GACAAAACAAAAACATATTTCTCCACAAACGAGGGTGGCAATTCCTGATCCAGTGTACCCCAAACACTTAAGAGTTCTTGTTCACATGAACAGGTTAACA
CAAGCAGGCATCACACCACAAACAGCAGCCCCTCGTTCACCCCTGCAAACTGTGTATCATAAAAAGGAAGGCAAATAAACCCTGCTTTTGTATGAATTCA
TGAATCAAATAGTATGATAGATTTCCAAAAACATTGGACTCAATAAACACTGGATCTACTTGGCAAATCAATCAATATAATAGAACACAATCCAGAACAA
TAACAACTTAGTATAGAACATCCTGTAACAGCATGTACCAGATTAAAAACGAAATTATCCGCGATTATTTAACCACCTCGATCCTATTACAAGATCACTC
AGGCAGGATTGTGATCCACGCAGGCAGGATAGCTAATCCACAACAGCCAGCCCAGCCTAAACCATACCACCACATACTAGAACACAAAGTCACACAATAA
TAGAGTAGCCCCGCAAGGAGAAAAAGATTTCTTAGATCTTGTCGATGTCCTCGTCCTCGAACTGGATGTAGTCGCTGCCCTCCTCGCCGTCCTCGGGCCC
ATCGACGTCGACGCCCTCGTTGAGCCTGAGCGTCTCGGGGAGCTCCCCGTAGGCCTTGAGCAGACGCGCCTCGTCGTTCATGTACTTGAGGATGACGTCA
GCCTTGTCGTCCTGGTAGTCGCGGAGGCCGACGAGGACGATGTCCCCGGCCGCGATCCAGACCTTCTTGTGCATCTTGCCCCGGATGTGGCAGAGGCGGC
GCGTGCCATCGACGCAGATGGCCTCGCACCGCCCGTTGCCGAGCATCCGGGTCACCTGCGCGTACTCCTGCCCGTCTTCCTTGAAGACGAGCTCGCGCTT
GTCGTCGTCGGCCTCGTTCTTTCCCCTCTTCCGGTTCTTGCCTCCCTTACCCTTGTTCTTCGGCATCTTCGCGGAGGAGGGCGAGAGCGGCGGCGGCGGC
GGCGGCGGCGGCGAGACGAAACCCTAGCGCGCGAGATCGAGGTGGGGAAAGGGAACGGTGCGGGTTGCGGTTCGTGGGTGTGTTGTGTTTGGAGGAGGGT
GGTGCGGCCGGCGGCGGCGAGTTTATAGGGTGAACGCGTGGGGAGGAGGGGTGGAGGCGTATGGTTCGTTGGATCTAGGGTTGGGCGGCGTGGACCGCTG
GGATAGGGAGAGCGGGGTCTTCTGGATAAGGCACTCCGCGTGCCT