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Detailed information on CNT30573272


BLAST search results

BLAST vs Swiss-Prot:
sp|P56331|IF1A_ONOVI, E-value = 5e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30630340Vitis viniferaVigna unguiculata21.7934.2793.04158forward
CNT3074265Vitis viniferaBrassica juncea29.6632.6385.58215forward
CNT30595805Vitis viniferaOryza meridionalis24.2841.1282.95176forward
CNT3055889Vitis viniferaAmborella trichopoda24.6924.984.92179forward
CNT30576889Vitis viniferaOryza barthii36.6940.6186.09266forward

Expression of CNT30573272

Peptides detected in this lncRNA

>peptide 1 (83 aa)
EKEEIELKQHKQEHQNHERLILKEVHYYCIEVTILIYKAEITHTVTLTFSITSNPQDRNIPSIRYPKSEKRKRKKTLADIRRE*

>peptide 2 (40 aa)
MMSPAAIQTFLCILPRMWQRRLVPSMHMASQRPLPSIRST*

Sequence

>CNT30573272
GAAAAAGAGGAGATAGAATTGAAACAACACAAACAGGAACATCAAAATCATGAAAGGTTAATTTTAAAGGAAGTTCACTATTATTGCATAGAAGTCACCA
TATTAATATATAAAGCCGAAATTACCCACACCGTAACCCTAACATTCAGTATTACAAGCAATCCTCAAGACCGCAATATTCCGTCCATCAGGTATCCAAA
AAGTGAAAAAAGAAAGAGAAAAAAAACCCTCGCCGATATACGGAGAGAGTGAGCGAATAAAAAACCCTAGATCGGCATCTAGATTTTGTCGATGTCCTCG
TCCTCGAACTCGATGTAATCGTCGCCCGCGCCTTCGTCCTCCTCGTCGAGGATGACGTCAGCCTTGTCGTCCTGGTAATCACGAAGACCGACTAGGATGA
TGTCGCCGGCGGCGATCCAGACCTTCTTGTGCATCTTGCCTCGGATGTGGCAGAGGCGCTTGGTGCCATCGATGCACATGGCCTCACAGCGGCCGTTGCC
GAGCATACGGAGCACCTGAGCGTACTCCTGGCCGTCTTCCTTGAAGACAAGCTCCCGTTTCTCATCGTCGGCCTCGTTCTTTCCTCTCTTCCTGTTCTTA
CCTCCCTTTCCCTTGTTCTTCGGCATCCTTCTCTCCCGGAAACCCTAACCCTAGATTTCTTTCGATTTCTGTTTTCGCAGACCCTAAGCTCTCGATCTTC
AAAATCTTTGGGTAACGTTTTGAAA