CANTATAdb - search

Detailed information on CNT3074265

BLAST search results

BLAST vs Swiss-Prot:
sp|P56331|IF1A_ONOVI, E-value = 9e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671227	Brassica juncea	Setaria viridis	15.48	40	89.22	102	forward
CNT30521379	Brassica juncea	Setaria italica	22.61	23.73	84.56	149	forward
CNT30631858	Brassica juncea	Vigna unguiculata	18.51	27.23	92.62	122	forward
CNT30708734	Brassica juncea	Glycine max	18.66	21.73	88.62	123	forward
CNT30304884	Brassica juncea	Triticum aestivum	22.15	31.67	88.36	146	forward
CNT30474933	Brassica juncea	Saccharum spontaneum	29.89	31.22	82.23	197	forward
CNT3011199	Brassica juncea	Zea mays	29.89	33	81.22	197	forward
CNT30718760	Brassica juncea	Malus domestica golden	18.66	33.42	82.11	123	forward
CNT30368761	Brassica juncea	Sorghum bicolor	30.5	10.89	82.59	201	forward
CNT30619918	Brassica juncea	Cajanus cajan	28.68	8.48	91.01	189	forward
CNT30595805	Brassica juncea	Oryza meridionalis	13.66	21.03	88.89	90	forward
CNT30573272	Brassica juncea	Vitis vinifera	28.68	26.07	86.77	189	forward
CNT30102311	Brassica juncea	Oryza rufipogon	22.15	21.82	89.04	146	forward
CNT30576889	Brassica juncea	Oryza barthii	22.15	22.29	89.04	146	forward
CNT30725237	Brassica juncea	Lupinus angustifolius	24.43	30.38	88.82	161	forward

Expression of CNT3074265

Peptides detected in this lncRNA

>peptide 1 (94 aa)
VSLVVLVVSQTDEYDVARGDPDLLVHLAADVAETLGAVDAHALASSVAEHAKDLRVFLSVFFEYELALLVVGFVLSSLPVLSSLSLVLRHGGNC*

>peptide 2 (94 aa)
MMSPAAIQTFLCILPRMWQRRLVPSMHMHSHLPLPSMRRTCAYSCPSSLNMSSRFSSSASFFPLFLFFPPFPLFFGMVVTVKLNRQMIQFKVLS*

Sequence

>CNT3074265
GTCAGCCTTGTCGTCCTGGTAGTCTCTCAGACCGACGAGTATGATGTCGCCCGCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGA
CGCTTGGTGCCGTCGATGCACATGCACTCGCATCTTCCGTTGCCGAGCATGCGAAGGACTTGCGCGTATTCTTGTCCGTCTTCTTTGAATATGAGCTCGC
GCTTCTCGTCGTCGGCTTCGTTCTTTCCTCTCTTCCTGTTCTTTCCTCCCTTTCCCTTGTTCTTCGGCATGGTGGTAACTGTTAAATTAAATAGACAAAT
GATTCAGTTCAAGGTTCTGTCTTAAAAACATGCAAAAAACAAAACTCTTGTCTCTTAGAAAACAAAAGCAGATTCAATTTCGAGCAAGGAGTACAGAAGA
ATCCTAAAACTACAAAATCAAACACTATCACGATAAGCTGGTGGTAGCAAGATCGATCGAAGATACATAGACCTCGCCGATTCAACTAACGATTACGAGA
CCGGGAACCTTAAATCTAGAGGTAAGAGATGAAATGAATCACATAGAAGACGAGAGGATCTACAACTAAGAAGCGATCTGGGACAAAGCTAAGAAGAAAA
CCTCTGGGCTGGGATTAGATTCGGAGATTCCTCTGTTTCTCTTTGGTTATGGATCAAAC