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Detailed information on CNT30102311


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521379Oryza rufipogonSetaria italica44.6947.6192.31299forward
CNT30616469Oryza rufipogonSesamum indicum39.7635.9584.21266forward
CNT30630340Oryza rufipogonVigna unguiculata27.3539.789.62183forward
CNT30708734Oryza rufipogonGlycine max44.845389300forward
CNT30304884Oryza rufipogonTriticum aestivum28.8541.8797.93193forward
CNT3074265Oryza rufipogonBrassica juncea40.0640.6785.45268forward
CNT30476314Oryza rufipogonSaccharum spontaneum40.6639.5393.01272forward
CNT3011199Oryza rufipogonZea mays35.4339.791.56237forward
CNT30718760Oryza rufipogonMalus domestica golden18.8334.2484.13126forward
CNT30368761Oryza rufipogonSorghum bicolor44.6916.2193.31299forward
CNT30619918Oryza rufipogonCajanus cajan43.0512.9191.32288forward
CNT30595805Oryza rufipogonOryza meridionalis26.0140.6589.08174forward
CNT30573246Oryza rufipogonVitis vinifera44.6941.2488.63299forward
CNT3055889Oryza rufipogonAmborella trichopoda34.9832.5582.48234forward
CNT30576889Oryza rufipogonOryza barthii98.21100.3196.5657forward
CNT30725237Oryza rufipogonLupinus angustifolius23.3229.4387.18156forward

Expression of CNT30102311

Peptides detected in this lncRNA

>peptide 1 (51 aa)
EQQVIPITHNHHVYQIKVTESNNYLTTSNHDKYLISQDETGNQTIHNSQPT*

>peptide 2 (88 aa)
MMSPAAIHTFLCILPRMWQRRLVPSTQMASQRPLPSIRVTWAYSCPSSLNTSSRLSSSASFLPLLRFFPPLPLFFGMAWLPAADPFFL*

Sequence

>CNT30102311
AGAACAGCAGGTCATCCCAATTACGCATAACCATCATGTATACCAGATTAAAGTTACGGAATCCAACAATTATTTAACCACCTCAAACCATGACAAATAT
CTCATATCACAAGATGAAACCGGCAACCAAACAATCCATAACAGCCAGCCCACATAGTACCACACATAGCTATTAATTAGAACATAGCAGTAAATTGTAG
CTGCGGAGAAAGAAGAAAAGAGCTTAGATCTTGTCGATGTCCTCGTCCTCGAACTGGATGTAGTCGTCGCGGGCCTCGTCGTTCATGTACTTGAGGATGA
CGTCGGCCTTGTCGTCCTGGTAGTCGCGGAGGCCGACGAGGATGATGTCCCCGGCGGCGATCCACACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAG
GCGCTTGGTGCCGTCGACGCAGATGGCCTCGCAGCGGCCGTTGCCGAGCATCCGCGTCACCTGGGCGTACTCCTGCCCGTCCTCCTTGAACACCAGCTCG
CGCTTGTCGTCGTCGGCCTCGTTCTTACCCCTCTTGCGGTTCTTCCCTCCCTTACCCTTGTTCTTCGGCATGGCTTGGCTACCGGCGGCGGATCCCTTCT
TCCTCTAGGCGTCGGCGGAGATGCGAAACCCTCGCGTTTCGATCGAGATTGGGAGCGGTGGAGTTGCGG