« Back to Triticum aestivum search


Detailed information on CNT30304884


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 1e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673634Triticum aestivumSetaria viridis29.9364.4994.93138forward
CNT30521379Triticum aestivumSetaria italica42.331.0592.31195forward
CNT30616469Triticum aestivumSesamum indicum21.9113.6586.14101forward
CNT30631858Triticum aestivumVigna unguiculata29.0729.9194.03134forward
CNT30708734Triticum aestivumGlycine max39.732.3387.43183forward
CNT3074265Triticum aestivumBrassica juncea31.6722.1588.36146forward
CNT30474933Triticum aestivumSaccharum spontaneum42.330.995.38195forward
CNT3011199Triticum aestivumZea mays42.332.6693.33195forward
CNT30718760Triticum aestivumMalus domestica golden27.3334.2483.33126forward
CNT30368761Triticum aestivumSorghum bicolor4110.2495.24189forward
CNT30619918Triticum aestivumCajanus cajan36.447.5394.05168forward
CNT30595805Triticum aestivumOryza meridionalis28.230.3786.92130forward
CNT30573246Triticum aestivumVitis vinifera38.8324.6991.06179forward
CNT30102311Triticum aestivumOryza rufipogon41.8728.8597.93193forward
CNT30576889Triticum aestivumOryza barthii36.0125.3497.59166forward
CNT30725237Triticum aestivumLupinus angustifolius33.8429.4386.54156forward

Expression of CNT30304884

Peptides detected in this lncRNA

>peptide 1 (42 aa)
VANNNNTTNTIIQQLFRHLKSQRFLVTKSINPQQPTDRHRRY*

>peptide 2 (38 aa)
MSPAAIQTFLCILPRMWQRRLVPSTQMASQRPLPSIRVT

Sequence

>CNT30304884
GTTGCAAACAATAATAATACGACGAACACGATAATCCAACAATTATTTAGGCACCTCAAGTCACAACGATTTCTCGTTACCAAATCCATCAATCCACAAC
AGCCCACCGACCGACACAGACGCTATTAGAACAGAATAGAACACAAAGTATAGGCGAGGGAGGAGGAAAAAAGGCTTAGATCTTGTCGATGTCCTCGTCC
TCGAACTGGATGTAGTCGCTGTCGCCCTCGCCCTCCTCGGGGCCGTCGACGTCAACGCCCTCGTTGAGGCGGGCCTCGTCGTTCATGTACTTGAGGATGA
CGTCGGCCTTGTCGTCCTGGTAGTCGCGGAGGCCGACGAGGACGATGTCCCCGGCGGCGATCCAGACCTTCTTGTGCATCTTGCCCCGGATGTGGCAGAG
GCGCTTGGTGCCGTCGACGCAGATGGCCTCGCAGCGCCCGTTGCCGAGCATCCGCGTCACC