« Back to Vigna unguiculata search


Detailed information on CNT30630340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616469Vigna unguiculataSesamum indicum38.3923.9286.44177forward
CNT30708734Vigna unguiculataGlycine max38.8331.6388.83179forward
CNT30619918Vigna unguiculataCajanus cajan40.788.4396.28188forward
CNT30595805Vigna unguiculataOryza meridionalis38.6141.5984.27178forward
CNT30573272Vigna unguiculataVitis vinifera34.2721.7993.04158forward
CNT3055889Vigna unguiculataAmborella trichopoda36.8823.6484.71170forward
CNT30102311Vigna unguiculataOryza rufipogon39.727.3589.62183forward
CNT30576889Vigna unguiculataOryza barthii39.727.9490.16183forward
CNT30725237Vigna unguiculataLupinus angustifolius34.2729.8189.87158forward
CNT3039930Vigna unguiculataMarchantia polymorpha36.0124.0279.52166forward

Expression of CNT30630340

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MMSPAAIQTFLCILPRMWQRRLVPSMHMASQRPFPSMRRTCAYSWPSSLNTNSLFSSSA

>peptide 2 (32 aa)
MAVEIRFYRCPRPRTRCSRWRWHRPPRPSRRG*

Sequence

>CNT30630340
TAGCACAATAATAACGAAACAAAAATGGGATGACATGACAGTCGAAAATATCCGAGTTATTGAACAATAGCGCATGATAAAATAAAATCCAACACCGAGA
TGTAAAGTGACGCGAGATGCAAGGAAGCAAATAGAAATACAAGTACAGATTCTAGAGATATATTATTATATAGATAACAATAACTTGATGGCGGTGGAGA
TTAGATTTTATCGATGTCCTCGTCCTCGAACTCGATGTAGTCGTTGGCGGTGGCATCGTCCTCCTCGTCCAAGCCGACGAGGATGATGTCACCGGCGGCG
ATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGGCGTTTGGTGCCGTCGATGCACATGGCCTCACAGCGACCGTTTCCGAGCATGCGGAGGA
CCTGCGCGTACTCCTGGCCGTCCTCCTTGAACACCAACTCTCTCTTCTCGTCGTCCGCTTC