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Detailed information on CNT30521379


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 1e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673634Setaria italicaSetaria viridis25.3274.3100159forward
CNT30616469Setaria italicaSesamum indicum39.6533.6582.33249forward
CNT30631858Setaria italicaVigna unguiculata24.6834.689.03155forward
CNT30708734Setaria italicaGlycine max47.775386300forward
CNT30304884Setaria italicaTriticum aestivum31.0542.392.31195forward
CNT3074265Setaria italicaBrassica juncea42.3640.3684.21266forward
CNT30476314Setaria italicaSaccharum spontaneum65.2959.5996.83410forward
CNT3011199Setaria italicaZea mays61.4664.6694.56386forward
CNT30368761Setaria italicaSorghum bicolor70.8624.1296.63445forward
CNT30619918Setaria italicaCajanus cajan46.513.0988.01292forward
CNT30595805Setaria italicaOryza meridionalis27.0739.7284.71170forward
CNT30573246Setaria italicaVitis vinifera47.7741.3887.33300forward
CNT3055889Setaria italicaAmborella trichopoda33.7629.4981.6212forward
CNT30102311Setaria italicaOryza rufipogon47.6144.6992.31299forward
CNT30576889Setaria italicaOryza barthii43.7941.9891.64275forward

Expression of CNT30521379

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MSPAAIQTFLCILPRMWQRRRVPSTQMASQRPLPSMRVTCAYSCPSSLKTSSRLSSSASFFPLFRFLPPLPLFFGILAVGKGVLCGLR

>peptide 2 (33 aa)
TSDPNHISRRITRLCWQKCKSITASLNHITTCY*

>peptide 3 (31 aa)
MLAKVQIHNSQPKPYHHMLLEHNNKKSHIRK*

Sequence

>CNT30521379
CACCTCAGACCCTAACCACATCTCTCGTCGCATCACAAGATTATGCTGGCAAAAGTGCAAATCCATAACAGCCAGCCTAAACCATATCACCACATGCTAC
TAGAACATAACAATAAGAAGTCACATATAAGAAAGTAACCGCGAGGAACAGAAATCTTAGATCTTGTCGATGTCCTCGTCCTCGAACTGGATGTAGTCGC
TGCCCTCCTCGCCGTCCTCGGGCCCGTCGACGTCGACACCCTCGTTGAGCCTGAGCGTCTCGGGGAGCTCCCCGTAGGCCTTGAGCAGGCGCGCCTCGTC
GTTCATGTACTTGAGAATGACGTCGGCCTTATCGTCCTGGTAGTCGCGGAGGCCAACGAGGACGATGTCGCCCGCCGCGATCCAGACCTTCTTGTGCATC
TTGCCCCGGATGTGGCAGAGGCGGCGCGTGCCATCGACGCAGATGGCCTCGCAGCGGCCGTTGCCGAGCATGCGGGTCACCTGCGCGTACTCCTGCCCAT
CCTCCTTGAAGACGAGCTCGCGCTTGTCGTCGTCGGCCTCGTTCTTTCCCCTCTTCCGGTTCTTGCCTCCCTTACCCTTGTTCTTCGGCATCTTGGCGGT
GGGGAAAGGGGTGTTGTGCGGCTTGCGG