Detailed information on CNT30671227


BLAST search results

BLAST vs Swiss-Prot:
sp|P47815|IF1A_WHEAT, E-value = 4e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616469Setaria viridisSesamum indicum31.3710.8188.7580forward
CNT30708734Setaria viridisGlycine max39.2217.6794100forward
CNT3074265Setaria viridisBrassica juncea4015.4889.22102forward
CNT30718760Setaria viridisMalus domestica golden46.6732.3482.35119forward
CNT30619918Setaria viridisCajanus cajan46.675.3492.44119forward
CNT30595805Setaria viridisOryza meridionalis28.2416.8298.6172forward
CNT30101986Setaria viridisOryza rufipogon89.835.1287.34229forward
CNT30576889Setaria viridisOryza barthii43.9217.196.43112forward
CNT30725237Setaria viridisLupinus angustifolius41.1819.8187.62105forward

Expression of CNT30671227

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSPAAIHTFLCILPRMWQRRLRPLPSIRVTCAYSCPSSLNTSSRFSSSASFLPRFRFVRCS*

>peptide 2 (83 aa)
LEDDVGLVVLVVAEADEDDVPRRDPHLLVHLAPDVAEALAAVAQHPRHLRVLLPVLLEHQLPLLVVRLVLAPLPVCALQLSFVG

Sequence

>CNT30671227
ACTTGAGGATGACGTCGGCCTTGTCGTCCTGGTAGTCGCGGAGGCCGACGAGGACGATGTCCCCCGCCGCGATCCACACCTTCTTGTGCATCTTGCCCCG
GATGTGGCAGAGGCGCTTGCGGCCGTTGCCCAGCATCCGCGTCACCTGCGCGTACTCCTGCCCGTCCTCCTTGAACACCAGCTCCCGCTTCTCGTCGTCC
GCCTCGTTCTTGCCCCGCTTCCGGTTTGTGCGCTGCAGCTAAGCTTCGTCGGGTT