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Detailed information on CNT30504486


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 6e-95

BLAST vs NONCODE:
NONMTRT001605, E-value = 2e-98

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548768Nicotiana attenuataIpomoea triloba48.6166.0490.61245forward
CNT30380492Nicotiana attenuataManihot esculenta52.9836.4886.89267forward
CNT30173253Nicotiana attenuataTrifolium pratense52.9831.3787.64267forward
CNT30572261Nicotiana attenuataVitis vinifera46.6328.7387.23235forward

Expression of CNT30504486

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPLDHQQGPMDQSYHQGRVGRQPHQEVHRLHGIPQQLPSR*

>peptide 2 (47 aa)
LNTNKISLYCQVAHNSFTRPSNNQNFENVLRFTFRAQSLWRMPKRCC*

Sequence

>CNT30504486
TTTAAACACAAACAAAATCTCATTATATTGTCAAGTAGCTCACAACAGCTTTACAAGGCCATCAAACAATCAGAATTTTGAGAATGTTTTAAGATTCACT
TTCCGGGCACAAAGTTTGTGGCGTATGCCCAAGCGTTGTTGTTAACTGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGGCCCTTTCCGGTAACAAT
GGCCTGAACAAAGAATCCAAACATAGAGAACATAGCAAGTCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCGAATGCCTCTGGATCATCAGCAAGG
CCCAATGGATCAAAGCTACCACCAGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCGGCTACACGGTATCCCTCAACAGCTCCCATCAAGATAA
CCTGGCAAGCCCAGATGGCCAAGATGCTCTGTGCGTGGATCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTAAAGATTTGTGATCCAGCCTT
GAAC