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Detailed information on CNT30171043


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 5e-66

BLAST vs NONCODE:
NONMTRT001605, E-value = 3e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30572261Trifolium pratenseVitis vinifera35.4826.8984.09220forward

Expression of CNT30171043

Peptides detected in this lncRNA

>peptide 1 (86 aa)
IFLFIYLEPVLMKQSIHHVLLNYCHEIKNTIITTSNSQCYIQVSHFSFIYFLFFFCSFCSLSWGKVCGKGPSIVVNWVSEVVSKVF*

>peptide 2 (31 aa)
MDQSCHLGRVGRQFHQEVRQQYGNPPQLPLG*

Sequence

>CNT30171043
ATTTTTCTGTTTATTTATTTAGAGCCTGTACTTATGAAACAATCAATTCATCATGTTCTTTTAAATTATTGCCATGAAATCAAGAATACAATAATAACTA
CAAGCAATTCACAATGTTATATTCAAGTCAGTCACTTCTCATTTATTTATTTTTTATTTTTTTTTTGTAGTTTTTGCTCACTTTCCTGGGGCAAAGTTTG
TGGCAAAGGCCCAAGCATTGTTGTTAACTGGGTCAGCGAGGTGGTCAGCAAGGTTTTCTAGCGGTCCCTTTCCCGTCACAATAGCTTGCACGAAGAATCC
AAACATAGAGAACATAGCTAACCTACCATTCTTGAGTTCCTTCACCTTCAATTCGGCAAAAGCCTCAGGGTCGTCAGCTAAGCCTAATGGATCAAAGCTG
CCACCTGGGTAGAGTGGGTCGACAATTTCACCAAGAGGTCCGCCAGCAATACGGTAACCCTCCACAGCTCCCATTAGGATAACTTGGACAGCCCAGATAG
CAAGGATACTTTGTGCGTGGACTAAGCTTGNNNNNNNNNNNNNNNNNNNNNNNCGCCTCTCCAAATTTGACACCATTGCGGGACAAGAGCTCTGGGAAGA
CACATCCCAAGGCTCCCAAC